PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538855.1_FGP011
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HB-other
Protein Properties Length: 197aa    MW: 22243.9 Da    PI: 4.4573
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538855.1_FGP011genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox35.41.8e-11971411151
                        HHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHH CS
           Homeobox  11 qleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNr 51 
                        ++e+Le+++  +++p+ + r++L  ++    +++ +q+kvWFqNr
  KN538855.1_FGP011  97 EVEALERVYTDCPKPTSACRQQLLCECpilaNIEPKQIKVWFQNR 141
                        689*****************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.90.940.107.5E-272498IPR012293RNA polymerase subunit, RPB6/omega
SuperFamilySSF635624.45E-2324102IPR006110RNA polymerase, subunit omega/K/RPB6
PfamPF011921.0E-95997IPR006110RNA polymerase, subunit omega/K/RPB6
PROSITE patternPS0111106478IPR020708DNA-directed RNA polymerase, 14-18kDa subunit, conserved site
SuperFamilySSF466894.19E-895141IPR009057Homeodomain-like
CDDcd000866.85E-895141No hitNo description
PfamPF000465.4E-997141IPR001356Homeobox domain
PROSITE profilePS500719.79997141IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.6E-1099141IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003899Molecular FunctionDNA-directed RNA polymerase activity
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
YEDEPPEPEI EEELCGLFTF SELEGAEEEP ENNNEDAVDD VVGAEDDREQ EKTARPWKTS  60
KYMTKYERAR ILGTRALQIS MNAPVMVELE GGTDPLEVEA LERVYTDCPK PTSACRQQLL  120
CECPILANIE PKQIKVWFQN RGYPGNPQGT PALSRLSPPG TLPDPPTVRR SVNVHAAESA  180
STSFCGMYRK RQMRLRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3h0g_F1e-155910971121DNA-directed RNA polymerases I, II, and III subunit RPABC2
3h0g_R1e-155910971121DNA-directed RNA polymerases I, II, and III subunit RPABC2
5u0s_f1e-155910971121RNA polymerase II subunit Rpb6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538855.1_FGP011
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0044631e-107AP004463.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0456B03.
GenBankAP0149641e-107AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D3H0F05e-79A0A0D3H0F0_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0AVI03e-78A0A0E0AVI0_9ORYZ; Uncharacterized protein
STRINGOBART08G15250.18e-80(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2375144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.13e-20HD-ZIP family protein