PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538850.1_FGP010
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Nin-like
Protein Properties Length: 368aa    MW: 41260.1 Da    PI: 9.9084
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538850.1_FGP010genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK50.54.1e-16177227352
             RWP-RK   3 keisledlskyFslpikdAAke.LgvclTvLKriCRqyGIkRWPhRkiksl 52 
                        k+++ +dl++yF+ + k+AA   L +++T+LK  CR + ++RWP+R+i+sl
  KN538850.1_FGP010 177 KTMTKKDLESYFHITQKSAAHIgLSIGTTALKNLCRANDLPRWPYRQIASL 227
                        899*****************84499***********************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151914.22157247IPR003035RWP-RK domain
PfamPF020429.3E-17178227IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MVPVGSIECL RKRCRQLRVL IHVNDHRKAV VVLHAGEDGK PDHVLVQNVS PEGEASVQST  60
YRIDVSRETP ESQAEMLNDW YTSFRMDTTG VLYDSDQNEK YPKVIYGVPR GHPGGDVPRS  120
LAILPPAPKK NQHGKAPATE STSSLVEEPL LLVQTDQTAA IGKRKKFTFP DQRKRVKTMT  180
KKDLESYFHI TQKSAAHIGL SIGTTALKNL CRANDLPRWP YRQIASLDNK FNNNLKKQIT  240
GWNLGKAVQG VTKAFKLRKE KEEFYQKIMS SMPEQLQDRW QPAHRCSTSS NIPSNGATAG  300
GDTGSGKLPM VPMGSIECLR KRCRQLRVLI HVNGETLESQ AEMLNGWYTS FRMDTTGVLY  360
DSDKNGIN
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538850.1_FGP010
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0054192e-97AP005419.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0046G12.
GenBankAP0057202e-97AP005720.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1123_B08.
GenBankAP0149652e-97AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBankCP0126172e-97CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015696653.11e-149PREDICTED: uncharacterized protein LOC107304984
TrEMBLA0A0P0XNA30.0A0A0P0XNA3_ORYSJ; Os09g0444100 protein
STRINGOS09T0444100-000.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP152171212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35590.15e-08RWP-RK domain-containing protein