PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538841.1_FGP012
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MIKC_MADS
Protein Properties Length: 357aa    MW: 40970.9 Da    PI: 10.8667
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538841.1_FGP012genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.51.8e-281059251
                       ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
             SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                       ri+n++ rqvtfskRrng+lKKA+ELS+LCdaev +++fsstg+lye+ss
  KN538841.1_FGP012 10 RIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLVVFSSTGRLYEFSS 59
                       8***********************************************96 PP
2K-box58.13.8e-202152961798
              K-box  17 lqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                        +q+e+a L+++++nLq+++++l+Ge+L+ L +++Lq Le++Le sl++iR +K  l++++  el +  + +++++ +L +k+
  KN538841.1_FGP012 215 WQREAASLRQQLHNLQESHKQLMGEELSGLGVRDLQGLENRLEISLRNIRMRKGSLIHQENIELSRSLNVMSQQKLELYNKV 296
                        9**********************************************************99999999888888888887775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.17161IPR002100Transcription factor, MADS-box
SMARTSM004327.9E-40160IPR002100Transcription factor, MADS-box
CDDcd002651.71E-43277No hitNo description
SuperFamilySSF554551.44E-31273IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-28323IPR002100Transcription factor, MADS-box
PfamPF003191.4E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-283859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129712.096212308IPR002487Transcription factor, K-box
PfamPF014861.3E-18215296IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KAKELSILCD AEVGLVVFSS TGRLYEFSST  60
NMKTVIDRYT NAKEELLGGN ATSEIKCPIT GELQQTPLKG AEYAHNPIVQ NLLNLRLARA  120
ASHAWAKGGR LPQWPHWCSR SPVTPLLSFS RFSMNHTLQH LRASGQAILK FANDGKSMHI  180
LTSNVQPKKR MKIIRRFEKK KRQIIGAYVP FGPIWQREAA SLRQQLHNLQ ESHKQLMGEE  240
LSGLGVRDLQ GLENRLEISL RNIRMRKGSL IHQENIELSR SLNVMSQQKL ELYNKVRCKI  300
LLETCDYMLT HYPKQLKELD FSFRPVNREV PQMQMKVPAL HTAFVSYKML IFLLVLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P9e-20174174Myocyte-specific enhancer factor 2B
1tqe_Q9e-20174174Myocyte-specific enhancer factor 2B
1tqe_R9e-20174174Myocyte-specific enhancer factor 2B
1tqe_S9e-20174174Myocyte-specific enhancer factor 2B
6bz1_A1e-19174174MEF2 CHIMERA
6bz1_B1e-19174174MEF2 CHIMERA
6bz1_C1e-19174174MEF2 CHIMERA
6bz1_D1e-19174174MEF2 CHIMERA
6c9l_A9e-20174174Myocyte-specific enhancer factor 2B
6c9l_B9e-20174174Myocyte-specific enhancer factor 2B
6c9l_C9e-20174174Myocyte-specific enhancer factor 2B
6c9l_D9e-20174174Myocyte-specific enhancer factor 2B
6c9l_E9e-20174174Myocyte-specific enhancer factor 2B
6c9l_F9e-20174174Myocyte-specific enhancer factor 2B
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1187201KKRMKIIRRFEKKKR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional factor that targets the CArG motif 5'-C(A/T)TTAAAAAG-3' in the promoter of D14. Directly suppresses D14 expression to control the outgrowth of axillary buds. {ECO:0000269|PubMed:23463009}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538841.1_FGP012
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126101e-143CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626794.13e-51MADS-box transcription factor 57 isoform X1
RefseqXP_015626795.13e-51MADS-box transcription factor 57 isoform X2
SwissprotQ6Z6W23e-52MAD57_ORYSJ; MADS-box transcription factor 57
TrEMBLA0A0E0NKJ02e-70A0A0E0NKJ0_ORYRU; Uncharacterized protein
STRINGORUFI02G32980.18e-68(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.21e-38AGAMOUS-like 16
Publications ? help Back to Top
  1. Guo S, et al.
    The interaction between OsMADS57 and OsTB1 modulates rice tillering via DWARF14.
    Nat Commun, 2013. 4: p. 1566
    [PMID:23463009]
  2. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  3. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]
  4. Wang H, et al.
    A Signaling Cascade from miR444 to RDR1 in Rice Antiviral RNA Silencing Pathway.
    Plant Physiol., 2016. 170(4): p. 2365-77
    [PMID:26858364]