PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN538841.1_FGP010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 222aa MW: 24693.9 Da PI: 4.672 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 25.2 | 2.8e-08 | 81 | 99 | 38 | 56 |
TS-HHHHHHHHHHHHHHHH CS Homeobox 38 gLterqVkvWFqNrRakek 56 +Lt +qV vWFqNrRa++k KN538841.1_FGP010 81 RLTPEQVAVWFQNRRARWK 99 69****************9 PP | |||||||
2 | HD-ZIP_I/II | 73.2 | 5.1e-24 | 79 | 134 | 35 | 90 |
HD-ZIP_I/II 35 eLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 + +l+p qvavWFqnrRAR+ktkqlE+d+++Lk+++dal++++++L +++++L+++ KN538841.1_FGP010 79 KRRLTPEQVAVWFQNRRARWKTKQLERDFDRLKASFDALRADHDALLQDNHRLHSQ 134 55799************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.35E-10 | 48 | 103 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 0.0022 | 51 | 105 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 10.301 | 73 | 101 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 5.8E-8 | 79 | 108 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.0E-5 | 81 | 99 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.47E-7 | 82 | 102 | No hit | No description |
Pfam | PF02183 | 7.1E-14 | 101 | 134 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MESGRLIFST AGSGAGQMLF LDCGAGGGGG VGGGAMFHRG TRPVLGMEEG GRGVKRPFFS 60 TPDELLEEEY YDEQLPEKKR RLTPEQVAVW FQNRRARWKT KQLERDFDRL KASFDALRAD 120 HDALLQDNHR LHSQHLAAVD SSVESYFPGG DEYHDCVMGP MDHAAGGIQS EEDDGAGSDE 180 GCSYYADDAG VLFADHGHHH HHQHADDDEE DGQQISCWWM WN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 93 | 101 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN538841.1_FGP010 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK058364 | 1e-149 | AK058364.1 Oryza sativa Japonica Group cDNA clone:001-014-F09, full insert sequence. | |||
GenBank | AK119592 | 1e-149 | AK119592.1 Oryza sativa Japonica Group cDNA clone:002-117-D05, full insert sequence. | |||
GenBank | AP004888 | 1e-149 | AP004888.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0617A09. | |||
GenBank | AP005751 | 1e-149 | AP005751.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0072H09. | |||
GenBank | AP014958 | 1e-149 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. | |||
GenBank | CT830627 | 1e-149 | CT830627.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI205P01, full insert sequence. | |||
GenBank | CT833153 | 1e-149 | CT833153.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI226L23, full insert sequence. | |||
GenBank | CT834699 | 1e-149 | CT834699.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI215L09, full insert sequence. | |||
GenBank | CT834700 | 1e-149 | CT834700.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI224F24, full insert sequence. | |||
GenBank | CU405673 | 1e-149 | CU405673.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C006O03, full insert sequence. | |||
GenBank | CU405960 | 1e-149 | CU405960.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C104H10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003572981.1 | 2e-63 | homeobox-leucine zipper protein HOX16 | ||||
Swissprot | Q6YWR4 | 8e-63 | HOX16_ORYSJ; Homeobox-leucine zipper protein HOX16 | ||||
TrEMBL | A0A0D3FA17 | 3e-84 | A0A0D3FA17_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A287UN35 | 4e-84 | A0A287UN35_HORVV; Uncharacterized protein | ||||
STRING | OBART02G31160.1 | 5e-85 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2609 | 38 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 1e-28 | homeobox 1 |
Publications ? help Back to Top | |||
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