PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538838.1_FGP021
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 249aa    MW: 27237.9 Da    PI: 6.2462
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538838.1_FGP021genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.33.3e-1470122155
                        CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        r+ +hn+ Er RR+++N+ ++ Lr llP a   + kKls  +++ ++ +YI +Lq
  KN538838.1_FGP021  70 RKLSHNAYERDRRKQLNELYSSLRALLPDA--DHTKKLSIPTTVSRVLKYIPELQ 122
                        6889*************************7..35666***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.66E-1667137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.02E-1269126No hitNo description
PROSITE profilePS5088813.95469121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.2E-1370137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-1170122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.4E-1075127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010106Biological Processcellular response to iron ion starvation
GO:0055072Biological Processiron ion homeostasis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MEQLFVDDPA FASSMSSLEA DIFSGAGQLP SSPWLDLDHL DDDVQDLSMA PTTANAVSSG  60
YGSGGSGSHR KLSHNAYERD RRKQLNELYS SLRALLPDAD HTKKLSIPTT VSRVLKYIPE  120
LQKQVENLER KKKELTATST TNCKPGVLGN QLMSEGMAPI VSATCINDME IMVQVSLLSN  180
VAGSILPLSK CIKVLENEGL HFISSSTSSG FGNRTFYSIH LQRSEGTINE ECPAFCERLE  240
KVVRNKAKL
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA motif 5'-CACGTGG-3' in the promoter of iron (Fe) deficiency-inducible genes as well as of genes involved in iron homeostasis, thus contributing to basal tolerance to iron deficiency, iron uptake from soil and iron transport, particularly during seed maturation and germination. Promotes the accumulation of mugineic acid family phytosiderophores (MAs). Required for ethylene-mediated signaling during iron deficiency responses. Improves growth and yield, especially in calcareous soil with low iron availability. Promotes iron concentration in shoots and grain. {ECO:0000250|UniProtKB:Q0JFZ0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538838.1_FGP021
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8335970.0CT833597.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA113H03, full insert sequence.
GenBankCT8335980.0CT833598.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA042K05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612709.11e-160protein IRON-RELATED TRANSCRIPTION FACTOR 2 isoform X1
SwissprotA2WZ601e-161IRO2_ORYSI; Protein IRON-RELATED TRANSCRIPTION FACTOR 2
TrEMBLA0A0E0N7Q10.0A0A0E0N7Q1_ORYRU; Uncharacterized protein
STRINGORUFI01G47560.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32803472
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.11e-32bHLH family protein