PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN538837.1_FGP011

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 159aa MW: 18478.1 Da PI: 9.9448

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN538837.1_FGP011	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	50.7	4e-16	64	114	3	53
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53 + +r++r++kNRe+A rsR+RK+a+i+eLe v +Le+eN ++ ke ee KN538837.1_FGP011 64 AMQRQKRMIKNRESAARSRERKQAYIAELESLVTQLEEENAKMFKEQEEQH 114 689*************************************99988876644 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.4E-7	62	124	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.438	64	112	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	7.8E-15	64	113	IPR004827	Basic-leucine zipper domain
CDD	cd14707	1.19E-18	66	116	No hit	No description
SuperFamily	SSF57959	3.06E-11	67	114	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.0E-13	67	112	No hit	No description
PROSITE pattern	PS00036	0	69	84	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 159 aa Download sequence Send to blast
MTLEDFLARE GAVKEDEAVV TDPSASVAEG QMVMGFLNGA EVAGGVTGGR SRKRHLMDPM 60 DRAAMQRQKR MIKNRESAAR SRERKQAYIA ELESLVTQLE EENAKMFKEQ EEQHQKRLKE 120 PSYRNIQYRT QYWLKEMVVP VIIRKTSARD LRRTNSMEW

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the ABA-responsive elements (ABREs) in vitro. Involved in abiotic stress responses and abscisic acid (ABA) signaling (PubMed:20039193). Involved in the signaling pathway that induces growth inhibition in response to D-allose (PubMed:23397192). {ECO:0000269\|PubMed:20039193, ECO:0000269\|PubMed:23397192}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN538837.1_FGP011

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by anoxia, drought, salt stress, oxidative stress, cold and abscisic acid (ABA) (PubMed:20039193). Induced by D-allose (PubMed:23397192). {ECO:0000269\|PubMed:20039193, ECO:0000269\|PubMed:23397192}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK067919	1e-175	AK067919.1 Oryza sativa Japonica Group cDNA clone:J013123H12, full insert sequence.
GenBank	GQ904238	1e-175	GQ904238.1 Oryza sativa Japonica Group ABA responsive element binding factor 1 mRNA, complete cds.
GenBank	OSU25283	1e-175	U25283.1 Oryza sativa clone OSE2 leucine zipper protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015612904.1	2e-91	bZIP transcription factor 12-like
Swissprot	Q0JHF1	2e-92	BZP12_ORYSJ; bZIP transcription factor 12
TrEMBL	B8A6X9	1e-104	B8A6X9_ORYSI; Uncharacterized protein
STRING	OMERI01G34900.1	3e-96	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2665	37	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44080.1	5e-31	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]