PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN538836.1_FGP005 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WRKY | ||||||||
Protein Properties | Length: 473aa MW: 51198.6 Da PI: 10.2936 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 68.1 | 1.3e-21 | 321 | 361 | 2 | 41 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkvers 41 D+++WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ KN538836.1_FGP005 321 ADEFSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERN 361 69*************************988*********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 5.7E-16 | 274 | 318 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 1.4E-22 | 308 | 361 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 22.791 | 315 | 361 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.54E-18 | 318 | 362 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.0E-20 | 320 | 369 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.1E-17 | 322 | 361 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 473 aa Download sequence Send to blast |
MEGMQEANRE AVQSCHRVLT LLSSPHSQLV PNKDLAAATG EAVAKFGSVA SRLNNGNGLQ 60 GHARVRKIKK PLPIFDSNLF LESPALAAAT VAKTPNPSPI TSLQLFPRYH QMEGSSSKDP 120 VRIPAQFPKR LLLDNPAVDS DGPSRGPPLQ LIQPVSVAPP AGTPHPALPS AHLHFIQQHQ 180 SYQRFQLMQQ MKMQSEMIKR SGLGEQGGSN SGGKGVNLKF DSSNCTASSS RSFLSSLSME 240 GSIASLDGSR SSRPFQLVSG SQTSSTPELG LMQRRRCTGR EDGSGRCTTG SRCHCAKKRK 300 LRIRRSIKVP AISNKVADIP ADEFSWRKYG QKPIKGSPHP RGYYKCSSVR GCPARKHVER 360 NYLVVQCDIQ LLQLYVWGCG GGEENISIPI LLNSEIGLTS AVTRNHSYPF YSVQSPNCAS 420 LKWYSATAPC PALSISLVGL WAVRKACFLV APSPLGKLEL MPDTHSPTAP STP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-12 | 308 | 361 | 2 | 54 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN538836.1_FGP005 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK121838 | 0.0 | AK121838.1 Oryza sativa Japonica Group cDNA clone:J033100L17, full insert sequence. | |||
GenBank | HQ858818 | 0.0 | HQ858818.1 Oryza sativa Japonica Group isolate UT1235 WRKY transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015632919.1 | 0.0 | protein WRKY1 | ||||
Swissprot | Q32SG4 | 0.0 | WRKY1_MAIZE; Protein WRKY1 | ||||
TrEMBL | A0A0D9ZCX5 | 0.0 | A0A0D9ZCX5_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0D6P5 | 0.0 | A0A0E0D6P5_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI03G30220.1 | 0.0 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10250 | 32 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04670.1 | 5e-48 | WRKY DNA-binding protein 39 |