PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538836.1_FGP005
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 473aa    MW: 51198.6 Da    PI: 10.2936
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538836.1_FGP005genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY68.11.3e-21321361241
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkvers 41 
                         D+++WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+
  KN538836.1_FGP005 321 ADEFSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERN 361
                        69*************************988*********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105335.7E-16274318IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.4E-22308361IPR003657WRKY domain
PROSITE profilePS5081122.791315361IPR003657WRKY domain
SuperFamilySSF1182906.54E-18318362IPR003657WRKY domain
SMARTSM007746.0E-20320369IPR003657WRKY domain
PfamPF031061.1E-17322361IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MEGMQEANRE AVQSCHRVLT LLSSPHSQLV PNKDLAAATG EAVAKFGSVA SRLNNGNGLQ  60
GHARVRKIKK PLPIFDSNLF LESPALAAAT VAKTPNPSPI TSLQLFPRYH QMEGSSSKDP  120
VRIPAQFPKR LLLDNPAVDS DGPSRGPPLQ LIQPVSVAPP AGTPHPALPS AHLHFIQQHQ  180
SYQRFQLMQQ MKMQSEMIKR SGLGEQGGSN SGGKGVNLKF DSSNCTASSS RSFLSSLSME  240
GSIASLDGSR SSRPFQLVSG SQTSSTPELG LMQRRRCTGR EDGSGRCTTG SRCHCAKKRK  300
LRIRRSIKVP AISNKVADIP ADEFSWRKYG QKPIKGSPHP RGYYKCSSVR GCPARKHVER  360
NYLVVQCDIQ LLQLYVWGCG GGEENISIPI LLNSEIGLTS AVTRNHSYPF YSVQSPNCAS  420
LKWYSATAPC PALSISLVGL WAVRKACFLV APSPLGKLEL MPDTHSPTAP STP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-12308361254WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538836.1_FGP005
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1218380.0AK121838.1 Oryza sativa Japonica Group cDNA clone:J033100L17, full insert sequence.
GenBankHQ8588180.0HQ858818.1 Oryza sativa Japonica Group isolate UT1235 WRKY transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632919.10.0protein WRKY1
SwissprotQ32SG40.0WRKY1_MAIZE; Protein WRKY1
TrEMBLA0A0D9ZCX50.0A0A0D9ZCX5_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0D6P50.0A0A0E0D6P5_9ORYZ; Uncharacterized protein
STRINGOMERI03G30220.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102503242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04670.15e-48WRKY DNA-binding protein 39