PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538830.1_FGP016
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 264aa    MW: 28586.6 Da    PI: 4.361
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538830.1_FGP016genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY72.26.9e-2368130258
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTT...EEEEEEES--SS CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpk...vveitYegeHnh 58 
                        +D + WrKYGqKe+k+s++pr YYrC+++   gC+++k+v++s++d +   v +itY geH +
  KN538830.1_FGP016  68 HDNFLWRKYGQKEIKNSKHPRLYYRCSYRddhGCTATKQVQQSEDDDTaspVYVITYFGEHFC 130
                        79**************************99999**********998763336799******76 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-2361131IPR003657WRKY domain
PROSITE profilePS5081117.69562128IPR003657WRKY domain
SuperFamilySSF1182904.84E-2264131IPR003657WRKY domain
SMARTSM007745.0E-3367132IPR003657WRKY domain
PfamPF031063.5E-2369130IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MALTEQILCY FDRAIAALHG GAGAGCREDD DGHAAVRGGK CKPERGSAGA RAAANSKRIR  60
VEKKATMHDN FLWRKYGQKE IKNSKHPRLY YRCSYRDDHG CTATKQVQQS EDDDTASPVY  120
VITYFGEHFC GRVADIGGPV VAGDDSEESE ELMVISFGSS GGAAAMGGAS AAYPWPCCGE  180
DAKNSGASQP WSLPDWEEVP PLTASVAEEL IEESTPEPEL VGLISSPDLD EYSLLDLELG  240
ESSFGIDRFI NFDELSVYSI DNAR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-1867130868OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00619PBMTransfer from AT5G22570Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538830.1_FGP016
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1447373e-58AC144737.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0018K15, complete sequence.
GenBankAP0149613e-58AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126133e-58CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639266.12e-64probable WRKY transcription factor 38
TrEMBLA0A0E0A0P91e-149A0A0E0A0P9_9ORYZ; Uncharacterized protein
STRINGOGLUM05G21470.11e-150(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46632667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22570.11e-19WRKY DNA-binding protein 38