PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538830.1_FGP007
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 1502aa    MW: 165441 Da    PI: 5.3352
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538830.1_FGP007genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.81.4e-0614821502526
                         --SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH    5 lCrffartGtCkyGdrCkFaHg 26  
                         +C+ f+++G+C+ G++C++ H+
  KN538830.1_FGP007 1482 ICK-FHENGYCRKGASCNYLHP 1502
                         799.9999*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM001512.7E-5164252IPR019835SWIB domain
SuperFamilySSF475925.67E-22170249IPR003121SWIB/MDM2 domain
Gene3DG3DSA:1.10.245.108.8E-27171254IPR003121SWIB/MDM2 domain
PfamPF022018.7E-17174247IPR003121SWIB/MDM2 domain
SMARTSM007191.8E-5308375IPR004343Plus-3 domain
SuperFamilySSF1590429.94E-15309392IPR004343Plus-3 domain
PfamPF031262.3E-8324374IPR004343Plus-3 domain
SuperFamilySSF552771.14E-15520586IPR003169GYF domain
PROSITE profilePS5082914.522533585IPR003169GYF domain
SMARTSM004442.0E-13534587IPR003169GYF domain
Gene3DG3DSA:3.30.1490.401.1E-14535586IPR003169GYF domain
PfamPF022132.9E-9536575IPR003169GYF domain
PROSITE profilePS5010314.12614771502IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.44E-514791501IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1502 aa     Download sequence    Send to blast
MRHSSNLAAS GIAVGTYAAA VKRQCTTCAI RVHTPFAKYA SSKIVVDFDD QNSWEYLFKL  60
YWVDLKGKLS LTLEELTSAK ARWNAPTTYT RKEKDESSDD LYDANNDDDA CSDCSSGKRK  120
RNSSRKKGRK RRKPNSDCSI ATKKVETVTR DDGTLPNKVP TEEASLPVDT KWASPELLEF  180
VGHMRDGDQS FISQFDVQAL LLDYIKQNNL RDPQRKSQII CDSRLHRLFR KTRVAHFEML  240
KLLEMHFIVS EPSAVNDGSQ GIINPDSAQI DHASRYNDMA AKFSPDRRRR MHRKMEREPQ  300
ANPEDYAAID MHNINLIYLR RTHKVSEKYS VGKKVTNFAL EIMNLNKKEI ITMDTVSNQD  360
FTEEECKRLR QSMKYDLISR LKVGDIQEKA KIFQFVRVND LLNTPEERAR RINEVLDVHV  420
DSHMDPDYES DDEFGNKKAV ERSVNWARSD PFVSPVKVKY SNSSQKNGDA TRHLKNLSKQ  480
NTERKSGAAR NFENSHSPVG MDIPKSGTNV KSTRCETTSP SSHGVVSSDM EPEKVWHYKD  540
PSGNVQGPFT LVQLSKWTSY FPRDMRVWLT FESEERSLLL TEVLSKQPKD FGQPASVTTS  600
SKSTVADTGQ NRNTEIVDLN KAPSPVGYSM LNSFETTVQS TKHSAPERES VNSLDDRLSH  660
STDSVPPKDA NASNSQAMCQ IKHSGSLPSP GSPHQRSDLH HDEVQHDPKN SLQAGSGKDL  720
NSRYDISQKL PSQRITRDVP SPVFAWSPSE SRTASSQHEG SCLSSTTNLC THDELHSSIA  780
SAKAKSFAPA TPVEDRGSSS PSGMLSLSER APICSPQSAP SASASDTCKM EENMNQQKTL  840
EADISNTSVN QSPQSKILPE SSPDNQDAEH EYRSPPPISE SKELSPQSRT TPESSPDNQD  900
TEREYPSPPP ISGSKEISQQ SRTILESSPD NQDNGHEYPS PPPIPESIEL SPHSKALPES  960
SPDNQDIEPE CPSPPQIPVS KELSRQSKIL PESSPGNQDI EPECPSPPQI PESKELSQQS  1020
KILPESSPDN HDIKCEYSSP TPIPESKELS LQSKILPESS SDNQDIKCEE PSPTPISKSK  1080
EVSPQSKILS ESYLDNQDVE RECPSSILIT ESKELAVDLP GSISLAPEKT ASTDVGENSS  1140
LAFIFPKSTL AGDDALKSVF DMAKAHLEEL YVESTVVIRD DMVVNPASGV ESIDMSENLL  1200
ESLMEQSCGT FYMDGTTALE GFLSGSTKEE PQCSSPIALS TCSSPIALSP WGEHGYYQGD  1260
SVGSSLWGVQ DDDPIGNIWP LSSQAPALQY SSGSTAHFID EATVTHGNNG VVLSSTPGEE  1320
VGLPNSGVCT DWGLVEQVNP EANDASVSMI DKNSGLVDSQ PSANDGSDVG TARNTNHNTN  1380
LSLNHETAVP LSRSSGEASR KHGFITDLNV ATSEEALGNT KNWNPSAGNA NRGSQRNHHR  1440
DRYSQISESW LLSSNYSRSR SDGFGTGGSS RSTPRGQTQR GICKFHENGY CRKGASCNYL  1500
HP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118132RKRNSSRKKGRKRRK
2118133RKRNSSRKKGRKRRKP
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538830.1_FGP007
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1214900.0AC121490.2 Oryza sativa Japonica Group chromosome 3 clone OSJNBb0005F16, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankJQ8288630.0JQ828863.1 Oryza sativa Japonica Group cultivar Kita-ake CCCH-type zinc finger protein (Ehd4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630500.10.0zinc finger CCCH domain-containing protein 20 isoform X2
TrEMBLA0A0D3FCW80.0A0A0D3FCW8_9ORYZ; Uncharacterized protein
STRINGOBART03G00960.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27091822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16485.13e-88nucleic acid binding;zinc ion binding;DNA binding