PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538826.1_FGP063
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 323aa    MW: 36071.1 Da    PI: 6.8685
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538826.1_FGP063genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1761.1e-54141421128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                        lppGfrFhPt+ee++++yL++kv +++  +  +i evd++k+ePwdLp k+  ++ekewyf++++d+ky+tg r+nrat++gyWkatgkdke
  KN538826.1_FGP063  14 LPPGFRFHPTNEEIITFYLAPKVVDSRGFCVAAIGEVDLNKCEPWDLPgKAKMNGEKEWYFYCQKDRKYPTGMRTNRATEAGYWKATGKDKE 105
                        79********************99999556588***************544445788*********************************** PP

                NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        ++++++ l+g+kktLvfykgrapkg kt+Wvmheyrl
  KN538826.1_FGP063 106 IFRNHHMLIGMKKTLVFYKGRAPKGDKTNWVMHEYRL 142
                        ***********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.1E-6110168IPR003441NAC domain
PROSITE profilePS5100559.11714168IPR003441NAC domain
PfamPF023651.8E-2715142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MGEQQQQVER QPDLPPGFRF HPTNEEIITF YLAPKVVDSR GFCVAAIGEV DLNKCEPWDL  60
PGKAKMNGEK EWYFYCQKDR KYPTGMRTNR ATEAGYWKAT GKDKEIFRNH HMLIGMKKTL  120
VFYKGRAPKG DKTNWVMHEY RLADASPPPS SAEPPRQDDW AVCRIFHKSS GIKKPVPVPM  180
QMPMPMPAAA NYQQQMAMAS AGIIQVPMQM QMPSMSESDQ LQMLDDFSTT ASLSLMAPPS  240
YSTLPAGFPL QINGGAHPQQ FVGNPSMYYH QQQQQMDMAG GGFVVSEPSS LVVSPQDAAA  300
DQNNNAADIS SMACNMDAAI WKY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-5211744171NO APICAL MERISTEM PROTEIN
1ut4_B3e-5211744171NO APICAL MERISTEM PROTEIN
1ut7_A3e-5211744171NO APICAL MERISTEM PROTEIN
1ut7_B3e-5211744171NO APICAL MERISTEM PROTEIN
3swm_A3e-5211747174NAC domain-containing protein 19
3swm_B3e-5211747174NAC domain-containing protein 19
3swm_C3e-5211747174NAC domain-containing protein 19
3swm_D3e-5211747174NAC domain-containing protein 19
3swp_A3e-5211747174NAC domain-containing protein 19
3swp_B3e-5211747174NAC domain-containing protein 19
3swp_C3e-5211747174NAC domain-containing protein 19
3swp_D3e-5211747174NAC domain-containing protein 19
4dul_A3e-5211744171NAC domain-containing protein 19
4dul_B3e-5211744171NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538826.1_FGP063
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2422680.0AK242268.1 Oryza sativa Japonica Group cDNA, clone: J075186C19, full insert sequence.
GenBankGU1203530.0GU120353.1 Oryza sativa Japonica Group clone KCS385F08 NAM protein mRNA, complete cds.
GenBankJN9443650.0JN944365.1 Oryza sativa Japonica Group clone KCS263E06 NAM protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015621005.10.0NAC domain-containing protein 79
TrEMBLA2WJP30.0A2WJP3_ORYSI; Uncharacterized protein
TrEMBLQ9FTY00.0Q9FTY0_ORYSJ; NAM protein
STRINGOS01T0104500-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145237121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.27e-79Arabidopsis NAC domain containing protein 87