PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538826.1_FGP062
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 304aa    MW: 33190.6 Da    PI: 9.0042
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538826.1_FGP062genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.94.9e-052342721255
                        HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        R +++ ++++ L++l+ +      +K + a++L +A+ YIk Lq
  KN538826.1_FGP062 234 RKEKLGDRIAALQQLVSPF-----GKTDTASVLMEAIGYIKFLQ 272
                        7788899*********998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.528222271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-11232284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.14E-5232276No hitNo description
Gene3DG3DSA:4.10.280.106.0E-9236279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MASSSSSSSL CDNHLLQEDL IPWPSMPFAP APNTFGLNHQ WSQPPMLSSS TDQLSSYELE  60
SLQSVESQLA AAAPPTLSPH LQAHQLSTVL MMQELGFQWS SCAAPADQHS IASSTNNNSN  120
VMMNEEELRP RPDQSLISNP SSIRDEHVPC PYAGPPAHLI QGPSNTLQLL RVTCVIFLPQ  180
KVLMKRNTNA AAQGRGGRHG SSTEHRSSTA LPPSSKKPRL ESHSSSMLPS FKVRKEKLGD  240
RIAALQQLVS PFGKTDTASV LMEAIGYIKF LQDQVETLSG PYLRSSKNSK KLACRAAQQQ  300
RVKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538826.1_FGP062
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1194930.0AK119493.1 Oryza sativa Japonica Group cDNA clone:001-134-D09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627200.11e-171uncharacterized protein LOC4326301
TrEMBLQ657Z31e-170Q657Z3_ORYSJ; Putative ethylene-responsive protein
STRINGORUFI01G00370.11e-171(Oryza rufipogon)
STRINGOS01T0105700-011e-171(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72403242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.15e-33bHLH family protein