PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN538826.1_FGP018

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NF-YC

Protein Properties

Length: 903aa MW: 99585.1 Da PI: 4.8031

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN538826.1_FGP018	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	83.8	1.9e-26	21	122	1	99
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdif 89 q+ fw ++ ie+++df +h++P+ar+kki +++ m++ + P++lsk celf+ el++r+w a++ +r + +dia+a+++t+ + KN538826.1_FGP018 21 QMDEFWRDRqkeIETTKDFSEHAIPMARLKKIASSQKGNMMMTFDMPAFLSKMCELFVQELAVRAWASAQSHNRCIILDTDIAEAIASTESY 112 68899765566***************************************************************************** PP NF-YC 90 dflvdivprd 99 dflvdi ++ KN538826.1_FGP018 113 DFLVDILHNH 122 ***98765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00125	4.2E-8	24	106	IPR007125	Histone H2A/H2B/H3
SuperFamily	SSF47113	2.79E-15	28	123	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	5.1E-18	45	119	IPR009072	Histone-fold
Gene3D	G3DSA:3.40.50.300	6.5E-13	681	860	IPR027417	P-loop containing nucleoside triphosphate hydrolase
Pfam	PF01202	6.5E-9	693	819	IPR031322	Shikimate kinase/gluconokinase

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 903 aa Download sequence Send to blast
MEQTLDVPRS LRLPTPKAQQ QMDEFWRDRQ KEIETTKDFS EHAIPMARLK KIASSQKGNM 60 MMTFDMPAFL SKMCELFVQE LAVRAWASAQ SHNRCIILDT DIAEAIASTE SYDFLVDILH 120 NHRVKHKSTP CSTLTTKRCR LVDQPSTSRL PYQHQLPLFA PTYTPAIPIT PSLMPPISHY 180 IPFQYPSLSQ EVSMMMASAP IVNRSMLLIH NIARGLDLQG NNISTFANNN IPDNIVGCSS 240 PAVLASMMST ALLDVAGASL NPPNSHSICT MNMINSSDPS GSSIGDIDVA NQASLAPSGH 300 FNLAILQESS CPSLLHSNNN DTIVAIPEGV DISGTMDVAA IVINGQEEHE RETNVEHHEQ 360 NEIYESMDIG IINASVVDGN KCSIRWDELG MADDSLLDKF LEEFQARNDG VLHNGIALHE 420 DPFLGDVVDA DGNCLFTAAR KAASAKPDAR DLRHRIVRRF SHLYAAAQAP DRDAIDAAVR 480 HLYAPDLKAG WGVHVVQELK LLAPKTLRHH LDAAINDLVD LGIQREMAAE TIYRERCIAV 540 NNGDSWAKYM SVSGSAEDEH NIITLQYTEE GLLTIDENRD GHAAAFGDDI AIECLATEFK 600 REVYVVQAHG ADAMVDEDNC VFFLPHRPRG EICEPPIFLF MKGTVAVYAV SCNVSGLKVL 660 TVEEEIQSVR KTAEAVGDFR KTPIYIVGTD CTAKRNIAKL LANSIIYRYL CSEELLEDVL 720 GGKDALNAFR ESDLNGYLEV ETEGLKQLTS MGSLVLCCGD GAVMNSTNLY AAPSPTILSY 780 LTSAFSSTLL NYANSLRGLL RHGVSIWIDI PLELVVNDML KTQATSDPDS FSEAMSRVRQ 840 RYDELKERYG VSDITVSVQN VASQLGYSSI DSVTLEDMVL EIVRQIERLI RAKSMMEAAG 900 KPF

Sequence ? help Back to Top

Protein Sequence Length: 903 aa Download sequence Send to blast

MEQTLDVPRS LRLPTPKAQQ QMDEFWRDRQ KEIETTKDFS EHAIPMARLK KIASSQKGNM  60
MMTFDMPAFL SKMCELFVQE LAVRAWASAQ SHNRCIILDT DIAEAIASTE SYDFLVDILH  120
NHRVKHKSTP CSTLTTKRCR LVDQPSTSRL PYQHQLPLFA PTYTPAIPIT PSLMPPISHY  180
IPFQYPSLSQ EVSMMMASAP IVNRSMLLIH NIARGLDLQG NNISTFANNN IPDNIVGCSS  240
PAVLASMMST ALLDVAGASL NPPNSHSICT MNMINSSDPS GSSIGDIDVA NQASLAPSGH  300
FNLAILQESS CPSLLHSNNN DTIVAIPEGV DISGTMDVAA IVINGQEEHE RETNVEHHEQ  360
NEIYESMDIG IINASVVDGN KCSIRWDELG MADDSLLDKF LEEFQARNDG VLHNGIALHE  420
DPFLGDVVDA DGNCLFTAAR KAASAKPDAR DLRHRIVRRF SHLYAAAQAP DRDAIDAAVR  480
HLYAPDLKAG WGVHVVQELK LLAPKTLRHH LDAAINDLVD LGIQREMAAE TIYRERCIAV  540
NNGDSWAKYM SVSGSAEDEH NIITLQYTEE GLLTIDENRD GHAAAFGDDI AIECLATEFK  600
REVYVVQAHG ADAMVDEDNC VFFLPHRPRG EICEPPIFLF MKGTVAVYAV SCNVSGLKVL  660
TVEEEIQSVR KTAEAVGDFR KTPIYIVGTD CTAKRNIAKL LANSIIYRYL CSEELLEDVL  720
GGKDALNAFR ESDLNGYLEV ETEGLKQLTS MGSLVLCCGD GAVMNSTNLY AAPSPTILSY  780
LTSAFSSTLL NYANSLRGLL RHGVSIWIDI PLELVVNDML KTQATSDPDS FSEAMSRVRQ  840
RYDELKERYG VSDITVSVQN VASQLGYSSI DSVTLEDMVL EIVRQIERLI RAKSMMEAAG  900
KPF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	1e-17	31	119	5	93	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN538826.1_FGP018

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK242226	0.0	AK242226.1 Oryza sativa Japonica Group cDNA, clone: J075175B02, full insert sequence.
GenBank	AP002969	0.0	AP002969.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0455C04.
GenBank	AP003610	0.0	AP003610.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0402A09.
GenBank	AP003727	0.0	AP003727.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0672D08.
GenBank	AP014957	0.0	AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBank	CP012609	0.0	CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0E0JD12	0.0	A0A0E0JD12_ORYPU; Uncharacterized protein
STRING	OPUNC01G00170.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9174	21	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63470.2	6e-23	nuclear factor Y, subunit C4