PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538826.1_FGP011
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 274aa    MW: 30081.7 Da    PI: 6.912
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538826.1_FGP011genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM27.87.2e-092047128
                NAM  1 lppGfrFhPtdeelvveyLkkkvegkkl 28
                       lppGfrFhPtdeel+ +yL k++++ ++
  KN538826.1_FGP011 20 LPPGFRFHPTDEELLLHYLGKRAAAAPC 47
                       79******************99988775 PP
2NAM45.72e-14519585128
                NAM  85 atgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        atg+dk++  + ++++ g+kk Lvfy+gr pkg+kt+W+mheyrl
  KN538826.1_FGP011  51 ATGTDKPISISdSETVLGVKKALVFYRGRPPKGTKTSWIMHEYRL 95 
                        79******998456679**************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100521.7571138IPR003441NAC domain
SuperFamilySSF1019411.96E-2817138IPR003441NAC domain
PfamPF023651.5E-122195IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MTIDLQLPAA ACGTAAGAGL PPGFRFHPTD EELLLHYLGK RAAAAPCPAP ATGTDKPISI  60
SDSETVLGVK KALVFYRGRP PKGTKTSWIM HEYRLANAAS ASYATSNMKQ QLASSSSSSS  120
SSASMRLDEW VLCRIYKKKE ANQQLQHYIN MMMDDDNDLQ VQQQQAQSHR MPRPPSISEY  180
LLDIDYSDDL PPSTHHTPSL HLGFTAVNEQ GNNNKRHKTM EEYYSISTAE MLRASSTTSN  240
NKSTQINFSS IFEPPPPAAA GHQLMPSHND DTSI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-242013915169Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538826.1_FGP011
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0028181e-128AP002818.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0436E04.
GenBankAP0149571e-128AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015621004.11e-117NAC transcription factor 29
TrEMBLA0A0E0FEZ31e-122A0A0E0FEZ3_ORYNI; Uncharacterized protein
STRINGONIVA01G00250.11e-123(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123736123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15510.15e-22NAC domain containing protein 2