PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538819.1_FGP031
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 443aa    MW: 50008 Da    PI: 6.5103
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538819.1_FGP031genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.41.4e-17142188148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        +g WT eEd +lv++v+q+G + W+ Ia+ ++ gR +kqc++rw+++l
  KN538819.1_FGP031 142 KGQWTLEEDRKLVKLVEQFGLRKWSHIAQILP-GRVGKQCRERWHNHL 188
                        799*****************************.*************97 PP
2Myb_DNA-binding51.72.1e-16194236145
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                        ++ W++eEd  l++ +k+ G++ W+ Ia++++ gRt++++k++w+
  KN538819.1_FGP031 194 KDTWSEEEDIVLIQTHKEVGNK-WAEIAKHLP-GRTENSIKNHWN 236
                        679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129428.59137192IPR017930Myb domain
SuperFamilySSF466899.71E-32139235IPR009057Homeodomain-like
SMARTSM007171.6E-15141190IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-27143195IPR009057Homeodomain-like
PfamPF139214.5E-20145204No hitNo description
CDDcd001671.42E-15145188No hitNo description
PROSITE profilePS5129421.249193243IPR017930Myb domain
SMARTSM007171.3E-15193241IPR001005SANT/Myb domain
CDDcd001671.19E-12196239No hitNo description
Gene3DG3DSA:1.10.10.605.3E-22196241IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010183Biological Processpollen tube guidance
GO:0045697Biological Processregulation of synergid differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MDFSCFQPHS GGCNDMPFDS YVQQNGHQEL HLVDHPFNNV TDGHEYYSPS AGGSFLPFAT  60
YYDLGHEYYP QGGEKDAVVV DRASPTIRKA SPHLPLFTPK SEVSHLIGGG VVGSYKAFEM  120
NSRLIRRKRA SGKSLKKANV VKGQWTLEED RKLVKLVEQF GLRKWSHIAQ ILPGRVGKQC  180
RERWHNHLRP NIKKDTWSEE EDIVLIQTHK EVGNKWAEIA KHLPGRTENS IKNHWNATKR  240
RQFARRRSRA SSKNPKSGTL LQNYIKSLGI GPIKSSVRQA PPESTAVSSS SPASTQKLAE  300
VNGKIRPDSN PSNQMVTQGI LTMDENSYIQ TNSCEELLVS TYDDLCLDMC DHLFETKDET  360
PYQVYNIDDD VDMNYIFNHI DYANKIGHEI DMEMAWDDDV LQDDESAGSS PLETPAGLAQ  420
INTVHVKEEM DLIEMVTRTQ SCG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C3e-431402432105C-Myb DNA-Binding Domain
1msf_C3e-431402432105C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00442DAPTransfer from AT4G18770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538819.1_FGP031
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2418120.0AK241812.1 Oryza sativa Japonica Group cDNA, clone: J065210K15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641269.10.0transcription factor MYB119 isoform X1
TrEMBLA2Y9N90.0A2Y9N9_ORYSI; Uncharacterized protein
STRINGOS06T0162700-010.0(Oryza sativa)
STRINGONIVA06G05390.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28063788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.12e-64myb domain protein 98