PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN538815.1_FGP049 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ARF | ||||||||
Protein Properties | Length: 705aa MW: 76866.6 Da PI: 7.7173 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.9 | 4.5e-24 | 107 | 208 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f k+lt+sd+++ g +++p+ +ae++ ++ + t+ +d +g +W++++iyr++++r++lt+GW+ Fv++++L +gD++vF+ KN538815.1_FGP049 107 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TVLAKDVHGVVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFM-- 194 89****************************996555555..8999*********************************************.. PP SSSEE..EEEEE-S CS B3 86 grsefelvvkvfrk 99 +++++ l+v+++r+ KN538815.1_FGP049 195 RTENGDLCVGIRRA 208 4588999****997 PP | |||||||
2 | Auxin_resp | 112.8 | 3.1e-37 | 267 | 350 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a ++++FevvY+Prast+eF+vk+ v++a+++++ +GmRfkmafetedss++++ +Gtv++v+ +dp+rWpnS+Wr+L+ KN538815.1_FGP049 267 AANLAVSGQPFEVVYYPRASTPEFCVKAGAVRAAMRTQWFAGMRFKMAFETEDSSRISWfMGTVSAVQVADPIRWPNSPWRLLQ 350 688999****************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.1E-37 | 99 | 210 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.16E-28 | 103 | 207 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.62E-21 | 106 | 207 | No hit | No description |
SMART | SM01019 | 3.4E-21 | 107 | 209 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.4E-22 | 107 | 208 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.999 | 107 | 209 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 3.2E-32 | 267 | 350 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 24.401 | 589 | 672 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007389 | Biological Process | pattern specification process | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 705 aa Download sequence Send to blast |
MAAVQVKDFC VEEMITFVDS AAKERERESD KCLDPQLWHA CAGGMVQMPP VSSKVYYFPQ 60 GHAEHAQGHG PVEFPGGRVP ALVLCRVAGV RFMADPDTDE EEKPASFAKT LTQSDANNGG 120 GFSVPRYCAE TIFPRLDYSA DPPVQTVLAK DVHGVVWKFR HIYRGTPRRH LLTTGWSTFV 180 NQKKLVAGDS IVFMRTENGD LCVGIRRAKK GGVGGPEFLP PPTPAAAGNY GGFSMFLRGG 240 DDDGNKMAAA ARGKVRARVR PEEVVEAANL AVSGQPFEVV YYPRASTPEF CVKAGAVRAA 300 MRTQWFAGMR FKMAFETEDS SRISWFMGTV SAVQVADPIR WPNSPWRLLQ VSWDEPDLLQ 360 NVKRVSPWLV ELVSNMPAIH LAPFSPPRKK LCVPLYPELP IDGQFPTPMF HGNPLARGVG 420 PMCYFPDGTP AGIQGARHAQ FGISLSDLHL NKLQSSLSPH GLHQLDHGMQ PRIAAGLIIG 480 HPAARDDISC LLTIGSPQNN KKSDGKRAPA QLMLFGKPIL TEQQISLGDA ASVAVKKSSS 540 DGNAENTVNK SYSDVSSPRS NQNGTTDNLS CGGVPLCQDN KVLDVGLETG HCKVFMQSED 600 VGRTLDLSVV GSYEELYRRL ADMFGIEKAE LMSHVFYRDA AGALKHTGDE PFSEFTKTAR 660 RLNILTDTSG DNLASWWSTV AILKAKIAGF LVLVQFQGGN SVFFN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 2e-73 | 11 | 371 | 34 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00461 | DAP | Transfer from AT4G30080 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN538815.1_FGP049 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB071299 | 0.0 | AB071299.1 Oryza sativa OsARF10 mRNA for auxin response factor 10, partial cds. | |||
GenBank | AK100322 | 0.0 | AK100322.1 Oryza sativa Japonica Group cDNA clone:J023079H12, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015644137.1 | 0.0 | auxin response factor 18 | ||||
Refseq | XP_015644138.1 | 0.0 | auxin response factor 18 | ||||
Swissprot | Q653H7 | 0.0 | ARFR_ORYSJ; Auxin response factor 18 | ||||
TrEMBL | A0A0E0Q1T6 | 0.0 | A0A0E0Q1T6_ORYRU; Auxin response factor | ||||
STRING | ORUFI06G27120.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP516 | 37 | 152 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 0.0 | auxin response factor 16 |
Publications ? help Back to Top | |||
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