PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538812.1_FGP016
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 532aa    MW: 56695.8 Da    PI: 6.737
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538812.1_FGP016genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS276.21e-841735312374
               GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                         + L ++A+a ++g+   a+++Larl+++  + g+p+ R a+y++eAL   la+  s+  ++  +s+    +++ +laa+k fs++sP+l+f
  KN538812.1_FGP016 173 LDELAAAAKATEAGNSVGAREILARLNQQLPQLGKPFLRSASYLKEALLLALAD--SHHGSSGVTSPL---DVALKLAAYKSFSDLSPVLQF 259
                        57899*************************************************..444444555555...499****************** PP

               GRAS  94 shltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefn 179
                        +++ta qa+l+++ g   +++H+iDfd++ G+QW+++lq+La R+       p l++T++ s +s++  el+ t+++L++fA+elg+pfefn
  KN538812.1_FGP016 260 TNFTATQALLDEIGGMatSCIHVIDFDLGVGGQWASFLQELAHRRgaggMALPLLKLTAFMSTASHHPLELHLTQDNLSQFAAELGIPFEFN 351
                        **************998899************************966444489*************************************** PP

               GRAS 180 vlvakrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270
                        ++   +l+++++ eL  ++ +E++aV+l +          +     +++L+lvk+l Pkvvv +++  d+ + +F ++fl++++ ++ l+ds
  KN538812.1_FGP016 352 AV---SLDAFNPAELISSSgDEVVAVSLPVGCSARA---PP----LPAILRLVKQLCPKVVVAIDHGGDRADLPFSQHFLNCFQSCVFLLDS 433
                        *8...99*****999777779********9777665...44....556******************************************** PP

               GRAS 271 leaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362
                        l+a  + +++ + k+Er+l++++++++v  ++++     +++  Wr+++ + GFkpv+ s+ a +qa++ll++v+++g++ve++ ++l+l+W
  KN538812.1_FGP016 434 LDAA-GIDADSACKIERFLIQPRVEDAVIGRHKA-----QKAIAWRSAFAATGFKPVQPSNLADAQADCLLKQVQVRGFHVEKRGAALTLYW 519
                        *888.7899*******************999888.....78899************************************************ PP

               GRAS 363 kdrpLvsvSaWr 374
                        ++ +Lvs+S+Wr
  KN538812.1_FGP016 520 QRGELVSISSWR 531
                        ***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.322146511IPR005202Transcription factor GRAS
PfamPF035143.5E-82173531IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MGFSLDHPLS GVASDLSSSG AHTATGGGGK ASLGFGLFSP EATSLEQQPP PSMLFHEGID  60
TKPPLLGAQP QFLLNHYQPQ PPNPAAALFM PLPPFPEHNH QSPHLQPPLK RHHAMPDDLY  120
LARNQQQSSA VAPGLAYSPP LHGPAPFQLH PSPPPIRGAM KSTAAEAAQQ QLLDELAAAA  180
KATEAGNSVG AREILARLNQ QLPQLGKPFL RSASYLKEAL LLALADSHHG SSGVTSPLDV  240
ALKLAAYKSF SDLSPVLQFT NFTATQALLD EIGGMATSCI HVIDFDLGVG GQWASFLQEL  300
AHRRGAGGMA LPLLKLTAFM STASHHPLEL HLTQDNLSQF AAELGIPFEF NAVSLDAFNP  360
AELISSSGDE VVAVSLPVGC SARAPPLPAI LRLVKQLCPK VVVAIDHGGD RADLPFSQHF  420
LNCFQSCVFL LDSLDAAGID ADSACKIERF LIQPRVEDAV IGRHKAQKAI AWRSAFAATG  480
FKPVQPSNLA DAQADCLLKQ VQVRGFHVEK RGAALTLYWQ RGELVSISSW RC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A8e-241725314375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538812.1_FGP016
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0040370.0AP004037.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1001_D02.
GenBankAP0048830.0AP004883.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0516F12.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627415.10.0scarecrow-like protein 6
TrEMBLA2X8160.0A2X816_ORYSI; Uncharacterized protein
STRINGOGLUM02G27370.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20203796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.19e-94GRAS family protein