PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538812.1_FGP011
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 606aa    MW: 63630.2 Da    PI: 6.6742
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538812.1_FGP011genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS259.89.7e-8027560530374
               GRAS  30 laspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavege..ervHiiDfdi 119
                           p g+p+ R a+y+ eAL   la+s +++++      t++ +++ +laa+k fs++sP+l+f+++ta qa+l+++ g   +++H+iDfd+
  KN538812.1_FGP011 275 SLPPLGKPFLRSASYLREALLLALADSHHGVSS-----VTTPLDVALKLAAYKSFSDLSPVLQFANFTATQALLDEIGGTatSCIHVIDFDL 361
                        556889********************6666553.....444456889********************************98899******** PP

               GRAS 120 sqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp.gEalaVnl 206
                        + G+QW+++lq+La R+       p l++T+++s +s++  el+ t+++L++fA+ lg+pfefn++   +l+++++ eL  ++ +E++aV+l
  KN538812.1_FGP011 362 GVGGQWASFLQELAHRRaaggVTLPLLKLTAFVSTASHHPLELHLTQDNLSQFAADLGIPFEFNAV---SLDAFNPGELISSTgDEVVAVSL 450
                        **************99976544599****************************************8...9*********888889******* PP

               GRAS 207 vlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298
                         +          +     +++L+lvk+lsPk+vv +++ ad+ + sF ++fl++++ ++ l+dsl+a  + +++ + k+Er+l+++++ ++v
  KN538812.1_FGP011 451 PVGCSARA---PP----LPAILRLVKQLSPKIVVAIDHGADRADLSFSQHFLNCFQSCVFLLDSLDAA-GIDADSACKIERFLIQPRVHDMV 534
                        *9777665...44....556*********************************************888.7899******************* PP

               GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                          +++       ++  Wr+ + +aGFkpvp s+ a++qa++ll++v+++g++ve++ ++l+l+W++ +Lvs+S+Wr
  KN538812.1_FGP011 535 LGRHKV-----HKAIAWRSVFAAAGFKPVPPSNLAEAQADCLLKRVQVRGFHVEKRGAALTLYWQRGELVSISSWR 605
                        988876.....56889***********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098536.272219585IPR005202Transcription factor GRAS
PfamPF035143.3E-77275605IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 606 aa     Download sequence    Send to blast
MRAALFGAER SGVVDLGGIG GGNRGLFWPS GKGGLVVVEP RSVLDCTRSP SPRNSASTLS  60
SSQGGGGADS TARDVGRGGG EGWDATATLG NAAGQDQSFL NWIIGAAGDL EQPGPPLLDN  120
AGFGIPAVDP LGFSLDHSLS GVASDLSSSG AHTATGGAGG GKASLGFGLF SPEATSLEQP  180
PPPMLFHEGI DTKPPLLGAQ PPGLLNHYHH QPPNPAATFF MPHPSFPEHN HQSPLLQPPP  240
KRHHSMPDDI YLARNQLPPA AAAAQGLPFS PLHASLPPLG KPFLRSASYL REALLLALAD  300
SHHGVSSVTT PLDVALKLAA YKSFSDLSPV LQFANFTATQ ALLDEIGGTA TSCIHVIDFD  360
LGVGGQWASF LQELAHRRAA GGVTLPLLKL TAFVSTASHH PLELHLTQDN LSQFAADLGI  420
PFEFNAVSLD AFNPGELISS TGDEVVAVSL PVGCSARAPP LPAILRLVKQ LSPKIVVAID  480
HGADRADLSF SQHFLNCFQS CVFLLDSLDA AGIDADSACK IERFLIQPRV HDMVLGRHKV  540
HKAIAWRSVF AAAGFKPVPP SNLAEAQADC LLKRVQVRGF HVEKRGAALT LYWQRGELVS  600
ISSWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-2532160580375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538812.1_FGP011
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627071.10.0scarecrow-like protein 6
TrEMBLA0A0E0NIU20.0A0A0E0NIU2_ORYRU; Uncharacterized protein
STRINGORUFI02G28330.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20203796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.16e-92GRAS family protein