PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN538810.1_FGP011 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 79aa MW: 8903.25 Da PI: 9.5934 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.2 | 6.6e-17 | 14 | 66 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT......-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg......tWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ lv +++++G g t ++Ia++++ Rt++++k++w+++l KN538810.1_FGP011 14 KGPWTPEEDLMLVSYIQEHGAGnwravpTNTAIASYLP-ERTDNDIKNYWNTHL 66 79********************5555555567788888.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 9.2E-25 | 5 | 74 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.39E-18 | 8 | 73 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.744 | 9 | 70 | IPR017930 | Myb domain |
SMART | SM00717 | 1.6E-13 | 13 | 68 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-15 | 14 | 66 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.15E-15 | 16 | 66 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 79 aa Download sequence Send to blast |
MGRPPCCDKV GVKKGPWTPE EDLMLVSYIQ EHGAGNWRAV PTNTAIASYL PERTDNDIKN 60 YWNTHLKKKL KKMQAAGGF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the regulation of gene (e.g. drought-regulated and flavonoid biosynthetic genes) expression and stomatal movements leading to negative regulation of responses to drought and responses to other physiological stimuli (e.g. light). {ECO:0000269|PubMed:22018045}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN538810.1_FGP011 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by abscisic acid (ABA) and osmotic stress (salt stress). {ECO:0000269|PubMed:22018045}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF474137 | 9e-68 | AF474137.1 Oryza sativa typical P-type R2R3 Myb protein gene, partial cds. | |||
GenBank | AP005636 | 9e-68 | AP005636.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0707C02. | |||
GenBank | AP014965 | 9e-68 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012617 | 9e-68 | CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015610978.1 | 2e-42 | myb-related protein 306 | ||||
Swissprot | B3VTV7 | 2e-38 | MYB60_VITVI; Transcription factor MYB60 | ||||
TrEMBL | A0A0A0LQ55 | 2e-45 | A0A0A0LQ55_CUCSA; Uncharacterized protein | ||||
STRING | ORUFI09G10920.1 | 8e-42 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP229 | 38 | 296 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62470.1 | 2e-40 | myb domain protein 96 |
Publications ? help Back to Top | |||
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