PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN538807.1_FGP016 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 202aa MW: 21179.9 Da PI: 11.7827 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.9 | 2e-07 | 38 | 73 | 12 | 47 |
HHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 12 lvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++ + +++G+g+W++I+r + Rt+ q+ s+ qky KN538807.1_FGP016 38 FLLGLEKYGKGDWRSISRNFVISRTPTQVASHAQKY 73 777899***************99************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00167 | 1.17E-5 | 37 | 74 | No hit | No description |
SuperFamily | SSF46689 | 5.38E-10 | 37 | 79 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.6E-11 | 37 | 76 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 6.6E-6 | 38 | 72 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 6.2E-6 | 38 | 73 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MGRRGRLSPL SRSAGRGSPG RRTSTGWRDG NHNGCWLFLL GLEKYGKGDW RSISRNFVIS 60 RTPTQVASHA QKYFIRLNSM NRERRRSSIH DITSVNNGDT SAAQGPITGQ PNGPSANPGK 120 SSKQSPQPAN APPGVDAYGT TIGQPVGGPL VSAVGTPVTL PVPAAPHIAY GMHAPVPGAV 180 VPGAPVNMPP MPYPMPPPTS HG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN538807.1_FGP016 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK068623 | 0.0 | AK068623.1 Oryza sativa Japonica Group cDNA clone:J013153N23, full insert sequence. | |||
GenBank | AK106166 | 0.0 | AK106166.1 Oryza sativa Japonica Group cDNA clone:001-208-B07, full insert sequence. | |||
GenBank | AL606668 | 0.0 | AL606668.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064G10, complete sequence. | |||
GenBank | AL732350 | 0.0 | AL732350.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: H0101F08, complete sequence. | |||
GenBank | AP014960 | 0.0 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012612 | 0.0 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015636999.1 | 1e-105 | transcription factor SRM1 | ||||
Swissprot | Q9FNN6 | 2e-62 | SRM1_ARATH; Transcription factor SRM1 | ||||
TrEMBL | A0A0D3G1P5 | 1e-105 | A0A0D3G1P5_9ORYZ; Uncharacterized protein | ||||
STRING | OBART04G29570.1 | 1e-106 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6376 | 38 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08520.1 | 2e-50 | MYB family protein |
Publications ? help Back to Top | |||
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