PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN538805.1_FGP037

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

GRAS

Protein Properties

Length: 733aa MW: 83968.1 Da PI: 6.5968

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN538805.1_FGP037	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	336.3	5.4e-103	353	725	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 l++lL++cA+avs ++++la+ +L+ ++++asp+gd qRla +++ L rl++++s++y+++ +++ + +++ l+++++ ++P+l+ KN538805.1_FGP037 353 LRTLLIHCAQAVSVSNHSLASDILKIIRHHASPTGDDSQRLALCLAYCLDIRLTGTGSQIYRKFITKRRN---VKDILKVFHVCISTCPFLR 441 6789*******************************************************999888887...9************** PP GRAS 93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlv 182 sh N++I + +g+++vHiiDf+i G+QWp+L+++La+ ++ pp+lRiTg++ pesg + +++g rLa++A+++++pfe++ + KN538805.1_FGP037 442 ASHYFSNRTIIDVSKGKSQVHIIDFGICFGFQWPSLFEELAKIEDRPPKLRITGIELPESGfrPYARSKNIGLRLADYAKTFNIPFEYQHIS 533 ********************************************************999999********************99 PP GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274 ++++e+l++e+++++++E+l+Vn++++++ + de+vs++s+r++vL++++ ++Pkv+v + +++ + Fl+rf e +++y++lfd+l+++ KN538805.1_FGP037 534 SNKWEALSPEDFNIEKDEVLIVNCIYRMKDIGDETVSINSARSRVLNTIRMMKPKVFVQGVLNGSYGVPFFLTRFKEVMYHYTSLFDMLDKN 625 99************************************************************************************** PP GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrp 366 +pr++e+r+ +Er + + nv+aceg er+er e+++kW+ r +aG+ ++pl+ ++ + + ++rk + + + v+ee+++lvlgWk+r KN538805.1_FGP037 626 IPRDNETRMILERDIYQYIMLNVIACEGPERIERPESYKKWKVRNLKAGLVQLPLNPAIVRETQDMVRKGYHKDFLVDEEDQWLVLGWKGRI 717 **********999999**********************************************9888************** PP GRAS 367 LvsvSaWr 374 L++ S W+ KN538805.1_FGP037 718 LYASSTWQ 725 *****6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	57.437	327	705	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.9E-100	353	725	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 733 aa Download sequence Send to blast
MGSDDNKRFD DFHVITNGPG SDAYSNEESI NLVNKSNDSE LFLYPPSPMN YYAPLPIISE 60 KDSCVAPSTS FCSKTYNPQL YVEKGNGTAD WCQTSGDYPE KSSINSDITL SYIDKILMQE 120 DIDDRGNEDT ALQAMEEPFY ELLGQKYPPF PQQQLLCVCD RLQNLSANTD KSNGHSCDTC 180 SVTRMTNISS SMNFNGNFQG FQFPWSLSSI TRETEQFTHH SNRMVVGLKV DGLSISEKPS 240 QDNCSLQIDA HYMRKHPLFE VHDRKSYPCI EDLDLLEGRS NKQYAIYYDE PIRDEMFDKV 300 LLCYDHKPLD EGVSLSRAMT NNSSKSSQIG QEKTSARRKT AGKRIPKRDV VDLRTLLIHC 360 AQAVSVSNHS LASDILKIIR HHASPTGDDS QRLALCLAYC LDIRLTGTGS QIYRKFITKR 420 RNVKDILKVF HVCISTCPFL RASHYFSNRT IIDVSKGKSQ VHIIDFGICF GFQWPSLFEE 480 LAKIEDRPPK LRITGIELPE SGFRPYARSK NIGLRLADYA KTFNIPFEYQ HISSNKWEAL 540 SPEDFNIEKD EVLIVNCIYR MKDIGDETVS INSARSRVLN TIRMMKPKVF VQGVLNGSYG 600 VPFFLTRFKE VMYHYTSLFD MLDKNIPRDN ETRMILERDI YQYIMLNVIA CEGPERIERP 660 ESYKKWKVRN LKAGLVQLPL NPAIVRETQD MVRKGYHKDF LVDEEDQWLV LGWKGRILYA 720 SSTWQPNDSG DSD

Sequence ? help Back to Top

Protein Sequence Length: 733 aa Download sequence Send to blast

MGSDDNKRFD DFHVITNGPG SDAYSNEESI NLVNKSNDSE LFLYPPSPMN YYAPLPIISE  60
KDSCVAPSTS FCSKTYNPQL YVEKGNGTAD WCQTSGDYPE KSSINSDITL SYIDKILMQE  120
DIDDRGNEDT ALQAMEEPFY ELLGQKYPPF PQQQLLCVCD RLQNLSANTD KSNGHSCDTC  180
SVTRMTNISS SMNFNGNFQG FQFPWSLSSI TRETEQFTHH SNRMVVGLKV DGLSISEKPS  240
QDNCSLQIDA HYMRKHPLFE VHDRKSYPCI EDLDLLEGRS NKQYAIYYDE PIRDEMFDKV  300
LLCYDHKPLD EGVSLSRAMT NNSSKSSQIG QEKTSARRKT AGKRIPKRDV VDLRTLLIHC  360
AQAVSVSNHS LASDILKIIR HHASPTGDDS QRLALCLAYC LDIRLTGTGS QIYRKFITKR  420
RNVKDILKVF HVCISTCPFL RASHYFSNRT IIDVSKGKSQ VHIIDFGICF GFQWPSLFEE  480
LAKIEDRPPK LRITGIELPE SGFRPYARSK NIGLRLADYA KTFNIPFEYQ HISSNKWEAL  540
SPEDFNIEKD EVLIVNCIYR MKDIGDETVS INSARSRVLN TIRMMKPKVF VQGVLNGSYG  600
VPFFLTRFKE VMYHYTSLFD MLDKNIPRDN ETRMILERDI YQYIMLNVIA CEGPERIERP  660
ESYKKWKVRN LKAGLVQLPL NPAIVRETQD MVRKGYHKDF LVDEEDQWLV LGWKGRILYA  720
SSTWQPNDSG DSD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	2e-40	357	725	8	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN538805.1_FGP037

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012611	0.0	CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024313379.1	0.0	scarecrow-like protein 9
TrEMBL	A0A0E0D3J2	0.0	A0A0E0D3J2_9ORYZ; Uncharacterized protein
STRING	OMERI03G22530.1	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11788	26	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-148	GRAS family protein