PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538801.1_FGP004
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 1285aa    MW: 145522 Da    PI: 7.1842
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538801.1_FGP004genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY59.66.1e-1912021262259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY    2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59  
                         dDg+nWrKY  K+  gs++ rs+YrC ++   gC+++k ve +++dp++  +tY  eHnh+
  KN538801.1_FGP004 1202 DDGWNWRKYSEKDLLGSKYKRSWYRCNQKqstGCMARKIVEPNNDDPNTWLVTYLYEHNHK 1262
                         8*************************9988889***************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF520581.03E-30256453IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.103.5E-25257450IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.40.50.3006.3E-6504627IPR027417P-loop containing nucleoside triphosphate hydrolase
SuperFamilySSF525401.92E-37508744IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009311.4E-34513771IPR002182NB-ARC
PRINTSPR003641.9E-12514529No hitNo description
PRINTSPR003641.9E-12584598No hitNo description
PRINTSPR003641.9E-12682696No hitNo description
SuperFamilySSF520581.41E-338081185IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.105.1E-218881178IPR032675Leucine-rich repeat domain, L domain-like
PRINTSPR003641.9E-1211321148No hitNo description
Gene3DG3DSA:2.20.25.805.6E-1911881263IPR003657WRKY domain
SuperFamilySSF1182906.41E-2011941263IPR003657WRKY domain
PROSITE profilePS5081122.06811961264IPR003657WRKY domain
SMARTSM007743.2E-2412011263IPR003657WRKY domain
PfamPF031062.2E-1712021262IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043531Molecular FunctionADP binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1285 aa     Download sequence    Send to blast
MASAGTRRHV RCPKCFSVLQ EPPNAPVYQC GGCGISLRAK IRARDAHALN VATKVQDRDD  60
KLVTGEAVDE LSSTGGTPFS DELSDTAPSS SSMQPGDSQI IVPFSSYWNL IRSTRGCLED  120
LHYQSLLAMI GRNRNKQTTS SMSTTSFQFA CGVDTNKIRY MIPTLDELVR FRSRLSSEPF  180
QYSSAVLAVD SSVARCIRLR RGIMGVLSNE NMEEEHRKLP VHAVDDLDYS WHEHDKVTRM  240
NGQTTQSCLD YLLPTAIRNL LYLDLSNCSN LVQLPDPIYL LPTAIRNLLY LDLSNCSNLV  300
QLPAPLGSLH NLSALNLSCC YSLHALPESL GRLHGLQILL LSFCHKLHNL PVSFGHLSNL  360
RLLDLSGCCS LEMLPDSLVN LSNLLEKLNL SDCIRLKDVP QPFDNLRKLE YLNFSGCHRM  420
NLNVDCLRKL VNLKCLTLSH HTDIKDFPYC YQDLADCLDL SRWLKNNWVH HQCNPKATLL  480
QSYRCHHQSM INRLLSYGSA SEEDDITSEK ILTSICIVGE SGMGKTELLR EIYNDEMIFQ  540
GFHLRIWINM CDKKGLLEKI IEFITCAYCY DAPSSILEET VREELNGKRF LLVLDDADIE  600
NRCFWSDLWK LANLGAVGSA LIVTTRSKEV AKLFGAMQTY YLRSLPSEEC FMVFQEHAII  660
GGFHINDYPQ FTKFGWMIVE KCGGNPLCMK ALSGLLCHSE TGLFEISSLL FEINSLGVGG  720
GILPALRLCY DLLPSRLKQC VKFCSLFPRN YVFFKHHLVQ LWISQGFIYP EEDGQPEDTG  780
LQYFNELFCR SFFQNGPSRD DDHKDKFVMH ELFHDLACSV SKDECFSSGE AFCSLPENIC  840
HLSVVLPDSK SVVLTKVQRH LQSLMVVKRS ASEYPGSFVP LLKILGLNDL LMKCRFLRAL  900
NLSCTTIREL PSSIMKMKHL QFLALNNTKI QSLPAEIGQL QTLQTLELKD CCCLIELPES  960
TMNLTKLRHL DVQKEPGNVH VSMPHGIGQL TDLQTLTVFN TGDDLSHCSI GDLKNLSGLR  1020
GHVHITESFG QRTNPLTTEG KHAPIFPSLE ILNLWEMYSL QFWNGTNNGD FPRLSHLSIS  1080
RCPKLTNLPP LISLLYLSFH CGDQLPAYSE LPSLKSLKIE SFQKLKSVRF CPEMPMLQKL  1140
EISDCKELLS VDGPLLSISN LKVVRCPKLR FGSSSLESCL MWEKLQRDKY TVKYLLKKTT  1200
TDDGWNWRKY SEKDLLGSKY KRSWYRCNQK QSTGCMARKI VEPNNDDPNT WLVTYLYEHN  1260
HKQEARPCDK PSPSDLHVQL ASGNT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j5t_C2e-405151020185687Disease resistance RPP13-like protein 4
6j5t_F2e-405151020185687Disease resistance RPP13-like protein 4
6j5t_G2e-405151020185687Disease resistance RPP13-like protein 4
6j5t_L2e-405151020185687Disease resistance RPP13-like protein 4
6j5t_O2e-405151020185687Disease resistance RPP13-like protein 4
6j5u_A2e-405151020185687Disease resistance RPP13-like protein 4
6j5v_A2e-405151020185687Disease resistance RPP13-like protein 4
6j5w_A2e-405151020185687Disease resistance RPP13-like protein 4
6j6i_C2e-405151020185687Disease resistance RPP13-like protein 4
6j6i_F2e-405151020185687Disease resistance RPP13-like protein 4
6j6i_G2e-405151020185687Disease resistance RPP13-like protein 4
6j6i_L2e-405151020185687Disease resistance RPP13-like protein 4
6j6i_O2e-405151020185687Disease resistance RPP13-like protein 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538801.1_FGP004
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644838.10.0uncharacterized protein LOC4342906 isoform X2
TrEMBLA0A0E0FK410.0A0A0E0FK41_ORYNI; Uncharacterized protein
STRINGONIVA01G13710.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125771216
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.15e-15WRKY family protein