PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KN538800.1_FGP004 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 170aa MW: 18480.7 Da PI: 6.3043 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 48.7 | 1.3e-15 | 2 | 43 | 15 | 56 |
HHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 15 LeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 Le F+++r++ + ++ +LA++lgL+ +qV vWFqNrRa++k KN538800.1_FGP004 2 LELSFREERKLETGRKVHLASELGLDPKQVAVWFQNRRARHK 43 999*************************************99 PP | |||||||
2 | HD-ZIP_I/II | 98.1 | 8.5e-32 | 1 | 80 | 13 | 92 |
HD-ZIP_I/II 13 lLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +LE sF+ee+kLe+ rKv+la+eLgl+p+qvavWFqnrRAR+k+k lE+++++Lk+a+da ++++Le+ev +L+e+l KN538800.1_FGP004 1 MLELSFREERKLETGRKVHLASELGLDPKQVAVWFQNRRARHKSKLLEEEFSKLKHAHDAAILHKCHLENEVLRLKERLV 80 69**************************************************************************9885 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 8.3E-5 | 1 | 49 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 14.997 | 1 | 45 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-14 | 1 | 43 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.1E-13 | 2 | 44 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 4.34E-11 | 2 | 45 | No hit | No description |
Pfam | PF00046 | 6.5E-13 | 2 | 43 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 1.1E-5 | 16 | 25 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 20 | 43 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.1E-5 | 25 | 41 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 170 aa Download sequence Send to blast |
MLELSFREER KLETGRKVHL ASELGLDPKQ VAVWFQNRRA RHKSKLLEEE FSKLKHAHDA 60 AILHKCHLEN EVLRLKERLV VTEEEVRRLR SAAGGHTASG EGGDIMGLGG GACVAGSPSS 120 SFSTGTCQPT SFGGGGGGDH LGDDDLVYVP EYGGYADNSV VEWFSLYGLI |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KN538800.1_FGP004 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK121889 | 0.0 | AK121889.1 Oryza sativa Japonica Group cDNA clone:J033105B17, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015646179.1 | 1e-103 | homeobox-leucine zipper protein HOX14 | ||||
Swissprot | Q7XI85 | 1e-104 | HOX14_ORYSJ; Homeobox-leucine zipper protein HOX14 | ||||
TrEMBL | A0A0E0QAD2 | 1e-101 | A0A0E0QAD2_ORYRU; Uncharacterized protein | ||||
TrEMBL | B8B7S8 | 1e-101 | B8B7S8_ORYSI; Uncharacterized protein | ||||
STRING | ORUFI07G20840.1 | 1e-102 | (Oryza rufipogon) | ||||
STRING | OS07T0581700-01 | 1e-102 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2006 | 38 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G36740.1 | 9e-27 | homeobox protein 40 |
Publications ? help Back to Top | |||
---|---|---|---|
|