PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN538795.1_FGP047 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 141aa MW: 15206.6 Da PI: 6.7995 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.5 | 2.2e-20 | 13 | 64 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GVr ++ +g+++AeIrdp + +r++lg+f+taeeAa+a+++a+ +++g KN538795.1_FGP047 13 SSYRGVRKRP-WGKFAAEIRDPERG--GARVWLGTFDTAEEAARAYDRAAFAMKG 64 67********.**********8333..4************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 6.6E-15 | 13 | 64 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.5E-23 | 13 | 72 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 7.2E-36 | 14 | 78 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.302 | 14 | 72 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.1E-32 | 14 | 72 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.7E-12 | 15 | 26 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.05E-28 | 15 | 72 | No hit | No description |
PRINTS | PR00367 | 4.7E-12 | 38 | 54 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 141 aa Download sequence Send to blast |
MEDDKSKEGK SSSSYRGVRK RPWGKFAAEI RDPERGGARV WLGTFDTAEE AARAYDRAAF 60 AMKGATAVLN FPGDHHHGAA SRMTSTGSSS SSFTTPPPAN SSAAAGRGGS DRTTDKVELE 120 CLDDKVLEDL LAEANYRDKN Y |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-28 | 9 | 79 | 9 | 79 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN538795.1_FGP047 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC105734 | 0.0 | AC105734.2 Oryza sativa Japonica Group chromosome 3 clone OSJNBb0050N02, complete sequence. | |||
GenBank | AC137635 | 0.0 | AC137635.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0038D20, from chromosome 3, complete sequence. | |||
GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. | |||
GenBank | AY339376 | 0.0 | AY339376.1 Oryza sativa (japonica cultivar-group) Ap23 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015630244.1 | 2e-98 | ethylene-responsive transcription factor ERF096 | ||||
Swissprot | Q9LTC5 | 1e-33 | ERF98_ARATH; Ethylene-responsive transcription factor ERF098 | ||||
TrEMBL | A0A0D3FDV7 | 4e-97 | A0A0D3FDV7_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0D9Z248 | 4e-97 | A0A0D9Z248_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0GGV9 | 4e-97 | A0A0E0GGV9_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0NPR8 | 4e-97 | A0A0E0NPR8_ORYRU; Uncharacterized protein | ||||
TrEMBL | A2XCK6 | 4e-97 | A2XCK6_ORYSI; Uncharacterized protein | ||||
TrEMBL | Q8H075 | 4e-97 | Q8H075_ORYSJ; AP2 domain containing protein, expressed | ||||
STRING | OGLUM03G03790.1 | 7e-98 | (Oryza glumipatula) | ||||
STRING | ORUFI03G03630.1 | 7e-98 | (Oryza rufipogon) | ||||
STRING | OS03T0150200-00 | 7e-98 | (Oryza sativa) | ||||
STRING | ONIVA03G03670.1 | 7e-98 | (Oryza nivara) | ||||
STRING | OBART03G03890.1 | 7e-98 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP103 | 37 | 465 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23230.1 | 5e-21 | ERF family protein |
Publications ? help Back to Top | |||
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