PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538794.1_FGP009
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 264aa    MW: 28429.8 Da    PI: 8.4787
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538794.1_FGP009genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.97.4e-18120174256
                        T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                        rk+ ++tkeq + Le+ F+ ++ +s++++ eLA++l+L+ rqV vWFqNrRa+ k
  KN538794.1_FGP009 120 RKKLQLTKEQSTLLEDSFRVHNILSHAQKHELARQLKLKPRQVEVWFQNRRARTK 174
                        778899***********************************************98 PP
2HD-ZIP_I/II115.72.8e-37120208190
        HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                        +kk++l+keq++lLE+sF+ ++ L++ +K+elar+L+l+prqv+vWFqnrRARtk+kq+E+d+e++kr++++l++en++L++e  eLr +
  KN538794.1_FGP009 120 RKKLQLTKEQSTLLEDSFRVHNILSHAQKHELARQLKLKPRQVEVWFQNRRARTKLKQTEVDCEFMKRCCESLTDENKQLKHELMELR-R 208
                        69*************************************************************************************9.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.6E-18103177IPR009057Homeodomain-like
SuperFamilySSF466898.55E-19105177IPR009057Homeodomain-like
PROSITE profilePS5007117.038116176IPR001356Homeobox domain
SMARTSM003892.4E-13118180IPR001356Homeobox domain
PfamPF000463.6E-15120174IPR001356Homeobox domain
CDDcd000861.66E-13120177No hitNo description
PROSITE patternPS000270151174IPR017970Homeobox, conserved site
PfamPF021837.7E-9176208IPR003106Leucine zipper, homeobox-associated
SMARTSM003402.1E-15176222IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MYSSSSMEGE DLGSWLGLGI GGGGYGYGGD DCRRSPSSPS PVQMLFSQHV KEEITRGYDH  60
GRDEEQASGS KIMKGERGAR LRVMRSIRNN GGDGSCSRVL SLGDAGGDGG SSGGGGGGTR  120
KKLQLTKEQS TLLEDSFRVH NILSHAQKHE LARQLKLKPR QVEVWFQNRR ARTKLKQTEV  180
DCEFMKRCCE SLTDENKQLK HELMELRRLA SAAAGSQLYV QFPRAAAAAM VNVCPSCEKV  240
TVMGGGGGDD GDGETGKSSS SYSL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1168176RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538794.1_FGP009
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0054450.0AP005445.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0028E05.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643687.11e-142homeobox-leucine zipper protein HOX18
SwissprotQ5Z6F61e-138HOX18_ORYSJ; Homeobox-leucine zipper protein HOX18
TrEMBLA0A0E0HUU71e-139A0A0E0HUU7_ORYNI; Uncharacterized protein
STRINGONIVA06G28660.11e-140(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81303448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.12e-46homeobox from Arabidopsis thaliana