PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538789.1_FGP032
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARR-B
Protein Properties Length: 473aa    MW: 50923.6 Da    PI: 4.4471
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538789.1_FGP032genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like30.67.6e-101301701555
            G2-like  15 veaveqLGGsekAtPktilelmkvkgL..tlehvkSHLQkYRl 55 
                        ++a eqL  +++  Pk+i++lm+++g+  t ++v SHLQkYR+
  KN538789.1_FGP032 130 IKAYEQL--KDQEGPKKIKQLMEMDGIfvTKTQVSSHLQKYRS 170
                        6788899..89999************655999**********6 PP
2Response_reg53.31.5e-18251311108
                        EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH...ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHH CS
       Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd...pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalea 89 
                        vl+vdD+ + +e l+ +l  +gy  v+  +++eeal+ ++++    ++++++D+ m gmdG++ll +i+    +l +i+++  ++  ++ + 
  KN538789.1_FGP032  25 VLVVDDDAAYLEELKLMLLLAGY-AVTGKTTAEEALKEVDQNPedyFHIVMTDVHMAGMDGFDLLHRING---RLLVIMFSEGEDVVMVMRT 112
                        89*********************.***************7777777**********************88...579**************** PP

                        HHTTESEEEESS--HHHHH CS
       Response_reg  90 lkaGakdflsKpfdpeelv 108
                        +  Ga d+ +Kp+  e++ 
  KN538789.1_FGP032 113 VMNGACDYMVKPMTSEAIK 131
                        ************9999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23005.8E-2422131No hitNo description
SuperFamilySSF521721.18E-2322132IPR011006CheY-like superfamily
SMARTSM004485.9E-1923134IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011031.11624138IPR001789Signal transduction response regulator, receiver domain
PfamPF000726.7E-1625131IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.51E-1626132No hitNo description
Gene3DG3DSA:1.10.10.601.9E-8132173IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MAENNGAVPP GCKLPAGGFL GRLHVLVVDD DAAYLEELKL MLLLAGYAVT GKTTAEEALK  60
EVDQNPEDYF HIVMTDVHMA GMDGFDLLHR INGRLLVIMF SEGEDVVMVM RTVMNGACDY  120
MVKPMTSEAI KAYEQLKDQE GPKKIKQLME MDGIFVTKTQ VSSHLQKYRS WLENERKKEE  180
ATSSSPCNPL SYTNCLDRGY STWKQSSVIT EGQQSSSFSG RPIHSMATSN GCLTTTDTQA  240
GNYVGVGAKE IENFISSHQR SLGTAIGQES TIEQASLHSE ITSVSRDAHE NGNSQARGSA  300
MSNGTSGTRG VLVTNENLLH VVTASLPSNM GQPSQPSQSF CTNELAAANY SIISDQNPGT  360
SHPTSSSAIN NQNSKTQEMS VSQTVELGCG NDVMLDWPEL VGLEDQLDND VLMNSFFDGD  420
LLQQGVVTAI DGTQEMLAFD STGDLGSVPP RGLNNEIASH ENTNGKNGAS SGP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538789.1_FGP032
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2427220.0AK242722.1 Oryza sativa Japonica Group cDNA, clone: J090045F10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639050.10.0two-component response regulator ORR27
SwissprotQ75HW20.0ORR27_ORYSJ; Two-component response regulator ORR27
TrEMBLA0A0D9ZYT90.0A0A0D9ZYT9_9ORYZ; Uncharacterized protein
STRINGOS05T0395600-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP159621113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-14response regulator 2
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]