PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN538788.1_FGP023

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

GATA

Protein Properties

Length: 1444aa MW: 160812 Da PI: 6.1383

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN538788.1_FGP023	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	49.6	5.3e-16	202	238	1	35
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C+nCgt++ Tp +Rrgp g++tLCnaCGl+++ kg+ KN538788.1_FGP023 202 CQNCGTSEkmTPAMRRGPAGPRTLCNACGLMWANKGT 238 **********************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51320	14.698	61	96	IPR010399	Tify domain
SMART	SM00979	6.8E-10	61	96	IPR010399	Tify domain
Pfam	PF06200	1.4E-11	64	95	IPR010399	Tify domain
PROSITE profile	PS51017	13.056	130	172	IPR010402	CCT domain
Pfam	PF06203	2.2E-13	133	170	IPR010402	CCT domain
PROSITE profile	PS50114	9.183	196	255	IPR000679	Zinc finger, GATA-type
SMART	SM00401	2.9E-10	196	249	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	1.9E-10	199	246	No hit	No description
CDD	cd00202	5.50E-15	201	256	No hit	No description
Gene3D	G3DSA:3.30.50.10	6.2E-14	201	240	IPR013088	Zinc finger, NHR/GATA-type
Pfam	PF00320	1.4E-13	202	238	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	202	229	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF56204	1.96E-105	1074	1437	IPR000569	HECT domain
CDD	cd00078	4.67E-137	1076	1442	No hit	No description
SMART	SM00119	1.6E-111	1094	1444	IPR000569	HECT domain
PROSITE profile	PS50237	82.842	1100	1444	IPR000569	HECT domain
Pfam	PF00632	5.3E-90	1131	1444	IPR000569	HECT domain
Gene3D	G3DSA:3.30.2160.10	1.5E-21	1206	1280	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0004842	Molecular Function	ubiquitin-protein transferase activity
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1444 aa Download sequence Send to blast
MRDAPADAAA GGGDNDDDDG DDGTEEDEEE DDDDEDEEEG EEEVPPPAED PAAPEPVSAL 60 LPGSPNQLTL LFQGEVYVFE SVTPEKVQAV LLLLGSNEMP PGLANMVLPN HRENRGYDDL 120 LQRTDIPAKR VVSLIRFREK RKERNFDKKI RYAVRKEVAL RMQRRKGQFA GRANMEGESL 180 SPGCELASQG SGQDFPSRES KCQNCGTSEK MTPAMRRGPA GPRTLCNACG LMWANKGTLR 240 SYPKAKAESS VVATEQSNAV VSQSGIDNKA LVVPNPDNIT ANHGEVAHPD GLTQTSMVSL 300 RGSSAREITR DALLQKVSEE RQLRSHLRRA AAAALSIQRV WRRYSVIRIV SEQLHEEWEA 360 LINQPDINLS KQWISSMMLR PFLFFVTQPS SWYKGQQDKT LNSISACFKI ILNSINSMDA 420 SKNLCSFAVG TPEERSIWLY QAKKLISLCS FILAKCNHSC CKDGNMVQIT DTAMRLAVSL 480 TDCKTWKKIT SEDTRAADAS VESLIEFIGA SQSGTYSCLR RYIANLGSHA LEKKNSSIST 540 DDQFLITASA VTIALRPFHS MRAGRGADLN GASKEYFTLI LTIPDLCKRL PPLLLPAIKH 600 ISILQPSLDI LLISKDKIFE EITKLEKSGV SSGGSGTIPY CGWALGNLVT LATEHDDLSN 660 SGCFVQGLDC CLYVDAINCV SQSLLKFFEE NKEMLLSFGD SVDTSFIKEN DTSDSCSRTL 720 FMDLLKPIYQ QWHLRKLLVL AKEDAVCKRQ NNHDPDTQTH SRSLKLLDIV CFYYHMLRIF 780 SLLNPSIGSL PILNMLSFTP GFLVDLWGAL EISIFGQAVH KLQEPKHERE SATSSSGEHV 840 SSMRQRRNFK DTSNKWSNVF QKITGKSNDA EDTNLVDNPL NSEQNGEALI LWDIEAMRQG 900 SECIGKDLMQ MLYLFCATYG HLLLVLDDIE FYEKQVPFTL EQQRKIASSL NTLVYSTFIQ 960 NGGSSRKPLI DVTVRCLNLL YERDSRHKFC PISLWLAPAR NGRIPIAAAA RAHEAAFATF 1020 PGNQFSGIPI RSSVLTTIPH VYPFEERVQM FREFIELDKA SRRVTGEVSG PGPGSIEIVI 1080 RRGYIVEDGY RQLNCLGSKL KSCIHVSFVS ECGLPEAGLD YGGLSKEFLT DLSKAAFSPE 1140 YGLFSQASAS DSSLIPSNSA KLLDNGIDMI EFLGRVVGKA LYEGILLDYC FSPVFVQKLL 1200 GRYSFLDELS TLDSELYRSL MQLKHYEGDV EDLCLDFTLT EELGGRRIVH ELRPGGKNIS 1260 VTNENKLHYV HAIADYKLNR QILPFANAFY RGLGDLISPS WLSLFNANEF NQLLSGGLQD 1320 FDVDDLRNNT KYTGGYTESS RSVKLFWEVI KGFKPTERCM LLKFVTSCSR APLLGFKYLQ 1380 PSFTIHKVPC DVTLWATIGG QDVDRLPSAS TCYNTLKLPT YKRSSTLRSK LLYAISSNTG 1440 FELS

Sequence ? help Back to Top

Protein Sequence Length: 1444 aa Download sequence Send to blast

MRDAPADAAA GGGDNDDDDG DDGTEEDEEE DDDDEDEEEG EEEVPPPAED PAAPEPVSAL  60
LPGSPNQLTL LFQGEVYVFE SVTPEKVQAV LLLLGSNEMP PGLANMVLPN HRENRGYDDL  120
LQRTDIPAKR VVSLIRFREK RKERNFDKKI RYAVRKEVAL RMQRRKGQFA GRANMEGESL  180
SPGCELASQG SGQDFPSRES KCQNCGTSEK MTPAMRRGPA GPRTLCNACG LMWANKGTLR  240
SYPKAKAESS VVATEQSNAV VSQSGIDNKA LVVPNPDNIT ANHGEVAHPD GLTQTSMVSL  300
RGSSAREITR DALLQKVSEE RQLRSHLRRA AAAALSIQRV WRRYSVIRIV SEQLHEEWEA  360
LINQPDINLS KQWISSMMLR PFLFFVTQPS SWYKGQQDKT LNSISACFKI ILNSINSMDA  420
SKNLCSFAVG TPEERSIWLY QAKKLISLCS FILAKCNHSC CKDGNMVQIT DTAMRLAVSL  480
TDCKTWKKIT SEDTRAADAS VESLIEFIGA SQSGTYSCLR RYIANLGSHA LEKKNSSIST  540
DDQFLITASA VTIALRPFHS MRAGRGADLN GASKEYFTLI LTIPDLCKRL PPLLLPAIKH  600
ISILQPSLDI LLISKDKIFE EITKLEKSGV SSGGSGTIPY CGWALGNLVT LATEHDDLSN  660
SGCFVQGLDC CLYVDAINCV SQSLLKFFEE NKEMLLSFGD SVDTSFIKEN DTSDSCSRTL  720
FMDLLKPIYQ QWHLRKLLVL AKEDAVCKRQ NNHDPDTQTH SRSLKLLDIV CFYYHMLRIF  780
SLLNPSIGSL PILNMLSFTP GFLVDLWGAL EISIFGQAVH KLQEPKHERE SATSSSGEHV  840
SSMRQRRNFK DTSNKWSNVF QKITGKSNDA EDTNLVDNPL NSEQNGEALI LWDIEAMRQG  900
SECIGKDLMQ MLYLFCATYG HLLLVLDDIE FYEKQVPFTL EQQRKIASSL NTLVYSTFIQ  960
NGGSSRKPLI DVTVRCLNLL YERDSRHKFC PISLWLAPAR NGRIPIAAAA RAHEAAFATF  1020
PGNQFSGIPI RSSVLTTIPH VYPFEERVQM FREFIELDKA SRRVTGEVSG PGPGSIEIVI  1080
RRGYIVEDGY RQLNCLGSKL KSCIHVSFVS ECGLPEAGLD YGGLSKEFLT DLSKAAFSPE  1140
YGLFSQASAS DSSLIPSNSA KLLDNGIDMI EFLGRVVGKA LYEGILLDYC FSPVFVQKLL  1200
GRYSFLDELS TLDSELYRSL MQLKHYEGDV EDLCLDFTLT EELGGRRIVH ELRPGGKNIS  1260
VTNENKLHYV HAIADYKLNR QILPFANAFY RGLGDLISPS WLSLFNANEF NQLLSGGLQD  1320
FDVDDLRNNT KYTGGYTESS RSVKLFWEVI KGFKPTERCM LLKFVTSCSR APLLGFKYLQ  1380
PSFTIHKVPC DVTLWATIGG QDVDRLPSAS TCYNTLKLPT YKRSSTLRSK LLYAISSNTG  1440
FELS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2xbb_A	1e-58	1073	1442	26	383	E3 UBIQUITIN-PROTEIN LIGASE NEDD4
2xbb_B	1e-58	1073	1442	26	383	E3 UBIQUITIN-PROTEIN LIGASE NEDD4
2xbf_A	1e-58	1073	1442	26	383	E3 UBIQUITIN-PROTEIN LIGASE NEDD4
5c7j_A	1e-58	1073	1442	22	379	E3 ubiquitin-protein ligase NEDD4
5c7j_B	1e-58	1073	1442	22	379	E3 ubiquitin-protein ligase NEDD4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable E3 ubiquitin-protein ligase which mediates ubiquitination and subsequent proteasomal degradation of target proteins. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN538788.1_FGP023

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC087851	0.0	AC087851.4 Oryza sativa chromosome 3 BAC OSJNBb0072E24 genomic sequence, complete sequence.
GenBank	AP014959	0.0	AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015632605.1	0.0	E3 ubiquitin-protein ligase UPL7
Refseq	XP_015632606.1	0.0	E3 ubiquitin-protein ligase UPL7
Swissprot	Q9SCQ2	0.0	UPL7_ARATH; E3 ubiquitin-protein ligase UPL7
TrEMBL	I1NVX1	0.0	I1NVX1_ORYGL; Uncharacterized protein
STRING	ORGLA01G0401100.1	0.0	(Oryza glaberrima)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21175.2	2e-61	ZIM-like 1

Publications ? help Back to Top
Downes BP,Stupar RM,Gingerich DJ,Vierstra RD The HECT ubiquitin-protein ligase (UPL) family in Arabidopsis: UPL3 has a specific role in trichome development. Plant J., 2003. 35(6): p. 729-42 [PMID:12969426] El Refy A, et al. The Arabidopsis KAKTUS gene encodes a HECT protein and controls the number of endoreduplication cycles. Mol. Genet. Genomics, 2003. 270(5): p. 403-14 [PMID:14530964] Takahashi H, et al. A simple and high-sensitivity method for analysis of ubiquitination and polyubiquitination based on wheat cell-free protein synthesis. BMC Plant Biol., 2009. 9: p. 39 [PMID:19348673]