PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KN538781.1_FGP049 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 173aa MW: 18551.2 Da PI: 4.9057 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 105.6 | 2.6e-33 | 73 | 131 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg++ prsYY+Ct gC+v+k++er++ dpk+v +tY+g+Hnh+ KN538781.1_FGP049 73 LDDGYRWRKYGQKVVKGNPRPRSYYKCTADGCNVRKQIERASADPKCVLTTYTGRHNHD 131 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.9E-35 | 58 | 133 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.94E-29 | 65 | 133 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 36.07 | 68 | 133 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.4E-36 | 73 | 132 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.0E-25 | 74 | 131 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 173 aa Download sequence Send to blast |
MAAGTDHNSG AAADDAAAVD DDDPSDDDDT LLHEDDDDGG EEGHDRGVDG EVGQRVVRKP 60 KIILQTRSDV DLLDDGYRWR KYGQKVVKGN PRPRSYYKCT ADGCNVRKQI ERASADPKCV 120 LTTYTGRHNH DPPGRPPAAA NLQMPGPAAM SLAGGGTAHQ QLSGGARQMK EET |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 7e-36 | 64 | 133 | 8 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 7e-36 | 64 | 133 | 8 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor involved in starch synthesis (PubMed:12953112). Acts as a transcriptional activator in sugar signaling (PubMed:16167901). Interacts specifically with the SURE and W-box elements, but not with the SP8a element (PubMed:12953112). {ECO:0000269|PubMed:12953112, ECO:0000269|PubMed:16167901}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KN538781.1_FGP049 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Up-regulated by sugar. {ECO:0000269|PubMed:12953112}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AY341848 | 0.0 | AY341848.1 Oryza sativa (japonica cultivar-group) WRKY7 mRNA, complete cds. | |||
GenBank | AY341852 | 0.0 | AY341852.1 Oryza sativa (japonica cultivar-group) WRKY11 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015630965.1 | 4e-84 | probable WRKY transcription factor 58 | ||||
Swissprot | Q6VWJ6 | 2e-39 | WRK46_HORVU; WRKY transcription factor SUSIBA2 | ||||
TrEMBL | A0A0E0KJ93 | 4e-86 | A0A0E0KJ93_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC03G31920.2 | 7e-87 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2875 | 32 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G13960.1 | 2e-39 | WRKY DNA-binding protein 4 |