PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538780.1_FGP007
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 317aa    MW: 35431.3 Da    PI: 9.1552
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538780.1_FGP007genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.44.7e-113965733
                       HHCHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1  7 errkqkNReAArrsRqRKkaeieeLee 33
                        rr+++NReAAr+sR+RKka+i++Le 
  KN538780.1_FGP007 39 MRRLAQNREAARKSRLRKKAYIQQLES 65
                       69***********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.8E-532108IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.1283579IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.31E-73773No hitNo description
PfamPF001706.6E-83866IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.7E-73980No hitNo description
PROSITE patternPS0003604055IPR004827Basic-leucine zipper domain
PfamPF141447.1E-30117191IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MASQFDQIPQ QQQKQHKKMA ESSTHNDHRM TKTLDPKIMR RLAQNREAAR KSRLRKKAYI  60
QQLESSKLRL AQMEQDLERA RSQGLLLGGS PGGNTSAGAA MFDAEYGRWL EDGRRRMAEL  120
HGGLHAHLPD GDLRAIVDDA LAHYDELFRL RAAAAKADVF HLITGTWATP AERCFLWMAG  180
FRPSDLLKTV APQLDPLTEQ QVVGICSLQQ SSQQAEEALS QGLEQLHQSL AETVANGGSV  240
VDEASLGSFM GYMALALGKL SNLEGFVIQA DNLRQQTLHQ MHRILTIRQA ARCFLAIGEY  300
HNRLRALSSL WASRPRE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538780.1_FGP007
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1016200.0AK101620.1 Oryza sativa Japonica Group cDNA clone:J033052J02, full insert sequence.
GenBankFJ7509290.0FJ750929.1 Oryza sativa clone KCS115G01 DNA-binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619722.10.0transcription factor TGAL11
SwissprotQ2QXL00.0TGL11_ORYSJ; Transcription factor TGAL11
TrEMBLA0A0E0BP390.0A0A0E0BP39_9ORYZ; Uncharacterized protein
STRINGOGLUM12G03900.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44443670
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08320.21e-127bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]