PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN538778.1_FGP002 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WRKY | ||||||||
Protein Properties | Length: 114aa MW: 12109.8 Da PI: 9.5042 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 36.8 | 7.6e-12 | 78 | 98 | 2 | 22 |
--SS-EEEEEEE--TT-SS-E CS WRKY 2 dDgynWrKYGqKevkgsefpr 22 dDgy+WrKYGqK++k+s++pr KN538778.1_FGP002 78 DDGYKWRKYGQKSIKNSPNPR 98 8*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 12.473 | 72 | 98 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 6.6E-10 | 74 | 98 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.42E-9 | 76 | 98 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.3E-4 | 77 | 112 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.1E-8 | 78 | 98 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 114 aa Download sequence Send to blast |
MVNKLISTVY SGPTISDIES ALSFTAAGDH QLLADGHNFA ASSCSPVVFS PEKTLSKTME 60 NKYTLKMKSC GNNGGLADDG YKWRKYGQKS IKNSPNPRLP PMIVTILTAA AAAA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN538778.1_FGP002 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK110625 | 1e-159 | AK110625.1 Oryza sativa Japonica Group cDNA clone:002-169-B02, full insert sequence. | |||
GenBank | AY341842 | 1e-159 | AY341842.1 Oryza sativa (japonica cultivar-group) WRKY1 mRNA, complete cds. | |||
GenBank | AY870605 | 1e-159 | AY870605.1 Oryza sativa (japonica cultivar-group) WRKY17 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015641374.1 | 2e-65 | probable WRKY transcription factor 49 | ||||
Swissprot | Q9FHR7 | 1e-18 | WRK49_ARATH; Probable WRKY transcription factor 49 | ||||
TrEMBL | A0A0D3EZ84 | 3e-64 | A0A0D3EZ84_9ORYZ; Uncharacterized protein | ||||
STRING | OBART01G45510.1 | 5e-65 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7525 | 35 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43290.1 | 9e-21 | WRKY DNA-binding protein 49 |