PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538773.1_FGP038
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 319aa    MW: 33962.5 Da    PI: 4.75
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538773.1_FGP038genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.72.4e-071251452647
                        HHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding  26 tIartmgkgRtlkqcksrwqky 47 
                        +Ia++++ gRt++++k++w+++
  KN538773.1_FGP038 125 AIAAKLP-GRTDNEIKNHWNTH 145
                        7******.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.39E-5125155IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.6E-10125160IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MPLAPRRLAG LHAERWRNHG KVGGQADMHP WGTEVAKPSA TPDCSFCVVE VRYCSIADGY  60
TYPLKKEILI CSARMQQLIE AEERASIEEQ SPGRAGCMQY SGSSSPWSTF PAAITGSGGG  120
GGGGAIAAKL PGRTDNEIKN HWNTHIKKKL IKMGIDPVTH EPLDRKQESP ATTSQSTVTA  180
ESSKSGEATR QQSRQLDDAV VRDMSVSAGG DSPPESSTNT ASTAGGSSSS SSSHHQDPLV  240
KWLLEEDLLP TGDEPWLNFT ASNDVDEFSS IAATGATPAL PWDVGMTTDW LLDYQDFGMG  300
DSSLVVDASM VNSSNGSNF
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538773.1_FGP038
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126170.0CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612200.11e-125protein ODORANT1
RefseqXP_015612203.11e-125protein ODORANT1
RefseqXP_015612204.11e-125protein ODORANT1
RefseqXP_015612205.11e-125protein ODORANT1
RefseqXP_015612206.11e-125protein ODORANT1
RefseqXP_015612207.11e-125protein ODORANT1
RefseqXP_015612208.11e-125protein ODORANT1
RefseqXP_015612209.11e-125protein ODORANT1
TrEMBLA0A0E0QUA21e-135A0A0E0QUA2_ORYRU; Uncharacterized protein
STRINGORUFI09G18880.11e-135(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22680.12e-16myb domain protein 85