PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN538771.1_FGP006 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 166aa MW: 18874.6 Da PI: 7.5939 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 83.7 | 1.1e-26 | 9 | 54 | 1 | 46 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46 krien +nrqvt+skRr+gi+KKA EL vLCda+va+i+fsstg++ KN538771.1_FGP006 9 KRIENATNRQVTYSKRRTGIMKKARELTVLCDAQVAIIMFSSTGNI 54 79******************************************87 PP | |||||||
2 | K-box | 34.2 | 1e-12 | 73 | 130 | 36 | 98 |
K-box 36 RhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 +++GedL+ L++ eL+ Leq+++ +lk ++++++q+e+ +kk k e+ k+L+++l KN538771.1_FGP006 73 QQRMGEDLDGLEFDELRGLEQNVDAALK-----EYHVITTQTETYKKKVKHSYEAYKTLQQEL 130 699************************7.....59************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 4.6E-34 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 29.1 | 1 | 54 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 4.03E-36 | 2 | 70 | No hit | No description |
SuperFamily | SSF55455 | 8.89E-29 | 2 | 73 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-24 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.0E-22 | 10 | 54 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-24 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-24 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 7.158 | 44 | 136 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 4.6E-8 | 73 | 130 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010093 | Biological Process | specification of floral organ identity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence Send to blast |
MGRGKIEIKR IENATNRQVT YSKRRTGIMK KARELTVLCD AQVAIIMFSS TGNIKGIFDR 60 YQQAIGTSLW IEQQRMGEDL DGLEFDELRG LEQNVDAALK EYHVITTQTE TYKKKVKHSY 120 EAYKTLQQEL GLREEPAFGF VDNTGGGLVH YTAKEIIAVI NNVILD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 9e-16 | 1 | 54 | 1 | 54 | MEF2C |
5f28_B | 9e-16 | 1 | 54 | 1 | 54 | MEF2C |
5f28_C | 9e-16 | 1 | 54 | 1 | 54 | MEF2C |
5f28_D | 9e-16 | 1 | 54 | 1 | 54 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the development of floral organs. Required for normal development of lodicules and stamens (whorls 2 and 3). May function as a heterodimer with MADS4. {ECO:0000269|PubMed:12506001, ECO:0000269|PubMed:12905025, ECO:0000269|PubMed:14558657}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00077 | ChIP-seq | Transfer from AT3G54340 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN538771.1_FGP006 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB003323 | 2e-85 | AB003323.1 Oryza sativa Japonica Group mRNA for MADS box-like protein, complete cds, clone:E20969. | |||
GenBank | AK069317 | 2e-85 | AK069317.1 Oryza sativa Japonica Group cDNA clone:J023014M24, full insert sequence. | |||
GenBank | AK289248 | 2e-85 | AK289248.1 Oryza sativa Japonica Group cDNA, clone: J100079D02, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015641661.1 | 1e-89 | MADS-box transcription factor 16 | ||||
Swissprot | Q944S9 | 9e-91 | MAD16_ORYSJ; MADS-box transcription factor 16 | ||||
TrEMBL | A0A0E0LFL1 | 9e-99 | A0A0E0LFL1_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC06G24880.1 | 1e-99 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5728 | 35 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54340.1 | 3e-38 | MIKC_MADS family protein |