PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538770.1_FGP044
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 397aa    MW: 44257.8 Da    PI: 5.096
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538770.1_FGP044genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM77.23.8e-2421357128
                NAM   7 FhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.....kvkaeekewyfFskrdkkyatgkrknratk..sgyWk.atgk. 88 
                        F+P++ e v +yL ++++g++   + +i   ++y++eP++L  +        ++e+ wyf s+rd+ky++gkr++r+t+  +g+Wk +tgk 
  KN538770.1_FGP044   2 FKPREAEAVEYYLLPRLQGRPPVPNPAIVVENVYEFEPERLInEkcnggVGGEGEEGWYFLSPRDRKYRNGKRPSRSTEdkAGRWKaSTGKt 93 
                        9********************7666779999**********733455532233777********************887679****556664 PP

                NAM  89 ..dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          + ++++  g ++ + ++Lv++kg  ++ +kt+W+m e+++
  KN538770.1_FGP044  94 egKDPITECYGGVKFCVTSLVYFKGPVKTEKKTKWLMREFTI 135
                        44567888799999***********99999**********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100531.6061166IPR003441NAC domain
SuperFamilySSF1019416.28E-272166IPR003441NAC domain
PfamPF023651.3E-122134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MFKPREAEAV EYYLLPRLQG RPPVPNPAIV VENVYEFEPE RLINEKCNGG VGGEGEEGWY  60
FLSPRDRKYR NGKRPSRSTE DKAGRWKAST GKTEGKDPIT ECYGGVKFCV TSLVYFKGPV  120
KTEKKTKWLM REFTIPHFEN KLDKTAAGSS NQRQLDQYVL CRIYTSPKKG ADDGEQAEVV  180
RGGEDIDEWA EACAVFDLGP ETAEGSDNAD AAAETEEGDM PSAKQAGKRP VAAAMRWPTM  240
QHNCMPSPAH SFQPRPVQWR PVLVGQAPPQ RRPVHHVGGH APMQQTQWTP VHIAQAPMQP  300
LPFDDWVFDP FDDPPPPMQQ LPVMMNNYQP QAPMQLPPMM NNDQPAMVHG GELQAPMQQL  360
PATTHGGEVQ APMPLNVYEE EQRPSQEDGG QCSNAEG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-14216621168Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538770.1_FGP044
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1306030.0AC130603.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone B1130G10, complete sequence.
GenBankAC1324850.0AC132485.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0022D06, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0HGX40.0A0A0E0HGX4_ORYNI; Uncharacterized protein
STRINGONIVA05G23670.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143612024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77450.14e-18NAC domain containing protein 32