PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KN538764.1_FGP011 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 207aa MW: 22511.1 Da PI: 4.6439 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.5 | 3e-08 | 33 | 61 | 22 | 48 |
T...-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 22 g...tWktIartmgkgRtlkqcksrwqkyl 48 g +W++Ia++++ gRt++++k+ w+++l KN538764.1_FGP011 33 GavtRWSAIAARLP-GRTDNEIKNVWHTHL 61 45667*********.************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.609 | 33 | 61 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 8.97E-8 | 34 | 68 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.7E-12 | 36 | 62 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.0E-6 | 37 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.40E-5 | 37 | 61 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 207 aa Download sequence Send to blast |
MEMTYLVYRT INVMFQQCCA RVAYFKRCWD GGGAVTRWSA IAARLPGRTD NEIKNVWHTH 60 LKKRLEPKPS SGREAAAPKR KAAKKAAAVA VAIDVPTTVP VSPEQSLSTT TTSAATTEEY 120 SYSMASSADH NTTDSFTSEE EFQIDDSFWS ETLAMTVDST DSGMEMSGGD PLGAGGASPS 180 SSNDDDMDDF WLKLFIQAGG MQNLPQI |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Acts as negative regulator of cold tolerance. Negatively regulates beta-amylase genes at the transcriptional level in response to cold stress. Suppresses beta-amylase gene expression by interacting with TIFY11A/JAZ9. Maltose produced by beta-amylases has a role in protecting cell membranes under cold stress conditions in rice and may contribute to the cold tolerance as a compatible solute. {ECO:0000269|PubMed:28062835}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KN538764.1_FGP011 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by cold stress and flooding. {ECO:0000269|PubMed:28062835}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK112056 | 0.0 | AK112056.1 Oryza sativa Japonica Group cDNA clone:001-110-C03, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015623124.1 | 1e-119 | transcription factor MYB30-like | ||||
Swissprot | Q6K1S6 | 1e-120 | MYB30_ORYSJ; Transcription factor MYB30 | ||||
TrEMBL | A0A0E0NHZ2 | 1e-118 | A0A0E0NHZ2_ORYRU; Uncharacterized protein | ||||
TrEMBL | A2X7E4 | 1e-118 | A2X7E4_ORYSI; Uncharacterized protein | ||||
TrEMBL | I1P2C8 | 1e-118 | I1P2C8_ORYGL; Uncharacterized protein | ||||
STRING | ORUFI02G25970.1 | 1e-119 | (Oryza rufipogon) | ||||
STRING | OS02T0624300-01 | 1e-119 | (Oryza sativa) | ||||
STRING | ORGLA02G0213400.1 | 1e-119 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP79 | 38 | 563 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G23250.2 | 1e-15 | myb domain protein 15 |
Publications ? help Back to Top | |||
---|---|---|---|
|