PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN538761.1_FGP048 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | E2F/DP | ||||||||
Protein Properties | Length: 201aa MW: 22792 Da PI: 6.1294 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 58.5 | 1.1e-18 | 2 | 63 | 30 | 71 |
E2F_TDP 30 vakeLvse.....................dvknkrRRiYDilNVLealnliekkekneirwkg 71 va+eLv+e d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg KN538761.1_FGP048 2 VADELVAEfadpnnnfaspdpdnpntpqfDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 63 89***************************************************.*******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01372 | 1.7E-9 | 1 | 63 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 8.7E-15 | 2 | 63 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 9.9E-27 | 2 | 69 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.5E-12 | 19 | 64 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01138 | 7.6E-7 | 70 | 149 | IPR014889 | Transcription factor DP, C-terminal |
SuperFamily | SSF144074 | 1.05E-18 | 70 | 132 | No hit | No description |
Pfam | PF08781 | 2.0E-16 | 71 | 132 | IPR014889 | Transcription factor DP, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MVADELVAEF ADPNNNFASP DPDNPNTPQF DEKNIRRRVY DALNVLMAMD IISKDKKEIQ 60 WKGLPRTSMS DVEELKTEII GLKGRIDKKN AYLQELEDQF VGLQNLAQRN EQLYGSGNAP 120 SGGVALPFIL VQHWGSPAKN QMIRKPGLEM EVSAQPHLSI INHPKLRGQT ELDYQHRPLF 180 PVYLKGVSSM NIRGYYDLLM V |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1cf7_B | 3e-21 | 2 | 68 | 34 | 93 | PROTEIN (TRANSCRIPTION FACTOR DP-2) |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN538761.1_FGP048 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK240989 | 0.0 | AK240989.1 Oryza sativa Japonica Group cDNA, clone: J065051E11, full insert sequence. | |||
GenBank | AK287809 | 0.0 | AK287809.1 Oryza sativa Japonica Group cDNA, clone: J065179H06, full insert sequence. | |||
GenBank | AY224551 | 0.0 | AY224551.1 Oryza sativa (japonica cultivar-group) isolate 26539 DP TF mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015614876.1 | 1e-89 | transcription factor-like protein DPB | ||||
Swissprot | Q9FNY2 | 6e-64 | DPB_ARATH; Transcription factor-like protein DPB | ||||
TrEMBL | A0A0E0BAZ1 | 1e-88 | A0A0E0BAZ1_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0ISI9 | 1e-88 | A0A0E0ISI9_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0QZL8 | 1e-88 | A0A0E0QZL8_ORYRU; Uncharacterized protein | ||||
TrEMBL | I1QUW9 | 2e-88 | I1QUW9_ORYGL; Uncharacterized protein | ||||
STRING | OGLUM10G11120.1 | 2e-89 | (Oryza glumipatula) | ||||
STRING | ORUFI10G11860.1 | 2e-89 | (Oryza rufipogon) | ||||
STRING | ONIVA10G10530.1 | 2e-89 | (Oryza nivara) | ||||
STRING | ORGLA10G0100200.1 | 3e-89 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1283 | 38 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03415.2 | 2e-66 | Transcription factor DP |