PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN538761.1_FGP005 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 66aa MW: 7819.67 Da PI: 8.9587 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 28.6 | 3.6e-09 | 11 | 35 | 1 | 26 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng 26 ++y+GVr+++ +g+++AeIrdp +g KN538761.1_FGP005 11 TKYRGVRRRP-WGKFAAEIRDPERGG 35 69********.**********73333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 8.2E-5 | 11 | 38 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 10.876 | 12 | 41 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.5E-10 | 12 | 37 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.35E-6 | 12 | 38 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 0.0037 | 12 | 53 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 66 aa Download sequence Send to blast |
MEDDRSKDTA TKYRGVRRRP WGKFAAEIRD PERGGARRGR GDKIEFEYLD DKVLDDLLDD 60 EKYRGK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN538761.1_FGP005 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC025907 | 2e-52 | AC025907.2 Oryza sativa Japonica Group cultivar japonica chromosome 10 clone nbxb0094K20, complete sequence. | |||
GenBank | AP014966 | 2e-52 | AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012618 | 2e-52 | CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015614004.1 | 3e-17 | ethylene-responsive transcription factor ERF096-like | ||||
TrEMBL | A0A0E0M850 | 3e-16 | A0A0E0M850_ORYPU; Uncharacterized protein | ||||
STRING | OMERI07G10900.1 | 5e-17 | (Oryza meridionalis) | ||||
STRING | OPUNC10G09910.1 | 5e-17 | (Oryza punctata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23230.1 | 2e-11 | ERF family protein |