PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538755.1_FGP005
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 301aa    MW: 32236.6 Da    PI: 10.0278
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538755.1_FGP005genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.73.6e-15116160347
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        +WT+eE+ +++ + ++lG+g+W+ I+r++ ++Rt+ q+ s+ qky
  KN538755.1_FGP005 116 PWTEEEHRKFLVGLEKLGKGDWRGISRHFVTTRTPTQVASHAQKY 160
                        8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.68318IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129419.454109165IPR017930Myb domain
SuperFamilySSF466899.72E-19110166IPR009057Homeodomain-like
TIGRFAMsTIGR015574.2E-18112164IPR006447Myb domain, plants
SMARTSM007177.0E-12113163IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-11113159IPR009057Homeodomain-like
PfamPF002491.2E-12116160IPR001005SANT/Myb domain
CDDcd001672.08E-10116161No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MARKCSSCGN NGHNSRTCTG QRSLESGSGG AGGVRLFGVQ LHVGGAPLKK CFSMECLSSP  60
SPAYYAAVAA AASNSSPTVS SSSSLVSVEE AGEKMANGYL SDGLMARAQE RKKGVPWTEE  120
EHRKFLVGLE KLGKGDWRGI SRHFVTTRTP TQVASHAQKY FLRQSSLTQK KRRSSLFDVI  180
EDAEKAPSVN ERLKLRHETT SVPAEMGFPA LSLGISSMAQ PEAMLLPPPS LTLTPSCSSP  240
AVSSSSSEQP RTIHPSLMVA KPQVQLQLQP PDLELKISTV RQNDQPGSSP RTPFLGTIRV  300
T
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00565DAPTransfer from AT5G56840Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538755.1_FGP005
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8419920.0CT841992.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C107I07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015625837.11e-174transcription factor MYBS3-like
SwissprotQ7XC572e-52MYBS3_ORYSJ; Transcription factor MYBS3
TrEMBLA0A0E0MSJ21e-180A0A0E0MSJ2_ORYRU; Uncharacterized protein
STRINGORUFI01G06450.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42313873
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.12e-50MYB_related family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Su CF, et al.
    A novel MYBS3-dependent pathway confers cold tolerance in rice.
    Plant Physiol., 2010. 153(1): p. 145-58
    [PMID:20130099]