PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN538751.1_FGP062 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 190aa MW: 20788.8 Da PI: 5.2346 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.2 | 9.4e-09 | 16 | 39 | 23 | 47 |
-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqky 47 +W+ Ia++++ gRt++++k++w++ KN538751.1_FGP062 16 RWSQIASHLP-GRTDNEIKNFWNSC 39 6*********.***********975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.183 | 1 | 44 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.64E-8 | 15 | 48 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.7E-12 | 16 | 57 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.14E-5 | 16 | 37 | No hit | No description |
Pfam | PF00249 | 1.3E-6 | 16 | 39 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MEVGWRAKGF EVWWCRWSQI ASHLPGRTDN EIKNFWNSCL KKKLRQRGLD PATHKPIAAT 60 AAAAATSSAS AVTQVDEDHK PHGAADGLAA NAKQSVFDPF PNLGYGESSS NSSNWTCAEV 120 SNVLDSEVLN WAAGAAAKAE PFADMEQQQH HGGYGGGEHQ VEDDATLEHK FSLPCHEQSL 180 AQFDFNLEYF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 39 | 45 | LKKKLRQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Possible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN538751.1_FGP062 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF111710 | 1e-110 | AF111710.1 Oryza sativa subsp. indica putative dnaJ-like protein, putative myb-related protein, putative farnesyl pyrophosphate synthase, and hypothetical protein genes, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638185.1 | 1e-83 | myb-related protein Hv33 | ||||
Swissprot | P20027 | 1e-39 | MYB3_HORVU; Myb-related protein Hv33 | ||||
TrEMBL | I1PXK7 | 2e-92 | I1PXK7_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA05G0210500.1 | 4e-93 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2327 | 33 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26660.1 | 1e-20 | myb domain protein 86 |