PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KN538750.1_FGP006 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 207aa MW: 22174.5 Da PI: 8.8409 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 86.5 | 2.4e-27 | 156 | 206 | 2 | 52 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEE CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitY 52 +Dgy+WrKYGqK vk+s++prsYYrCt+++C vkk+vers +dp++v++t+ KN538750.1_FGP006 156 EDGYRWRKYGQKAVKNSPYPRSYYRCTTPKCGVKKRVERSYQDPSTVITTW 206 8**********************************************9985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.2E-28 | 140 | 206 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.92E-24 | 148 | 206 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 26.222 | 150 | 207 | IPR003657 | WRKY domain |
SMART | SM00774 | 8.0E-26 | 155 | 207 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.2E-20 | 156 | 205 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 207 aa Download sequence Send to blast |
MESFFFSQPG GVGVGVGGGG GGVVGAGGAD EIMPYSSITD YLQGLLDPSG LARHLDVACP 60 SSQDTAGTGG VAGEGVAQRA TPNSSASFSS SDGEAEGGKS SRRCKKGQAK AEEEDDKDEE 120 DGENSKKPNK PKKKAEKRQR QPRVAFLTKS EVDHLEDGYR WRKYGQKAVK NSPYPRSYYR 180 CTTPKCGVKK RVERSYQDPS TVITTWP |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 6e-25 | 148 | 206 | 10 | 68 | Probable WRKY transcription factor 4 |
2lex_A | 6e-25 | 148 | 206 | 10 | 68 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KN538750.1_FGP006 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK108745 | 0.0 | AK108745.1 Oryza sativa Japonica Group cDNA clone:002-150-E09, full insert sequence. | |||
GenBank | AY341856 | 0.0 | AY341856.1 Oryza sativa (japonica cultivar-group) WRKY16 mRNA, complete cds. | |||
GenBank | HQ858857 | 0.0 | HQ858857.1 Oryza sativa Japonica Group isolate UT1620 WRKY transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015626307.1 | 2e-95 | WRKY transcription factor 71 | ||||
TrEMBL | A0A0E0C4X2 | 4e-96 | A0A0E0C4X2_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI01G20560.2 | 7e-97 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP623 | 37 | 173 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G29860.1 | 4e-37 | WRKY DNA-binding protein 71 |