PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538747.1_FGP036
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family BES1
Protein Properties Length: 284aa    MW: 29525 Da    PI: 6.3839
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538747.1_FGP036genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF82230.99.2e-10179472150
             DUF822  72 gskpleeaeaagssasaspesslqsslkssalaspvesysaspksssfpspssldsislasa.......asllpvlsvlslvsssl 150
                        g+kp+e++e++g+s s sp+ss+q        +sp++sy+asp+sssfps +s+ ++++ ++       + +lp+l++ls++++s+
  KN538747.1_FGP036  17 GYKPPERMEVIGCSVSPSPCSSYQ--------PSPRASYNASPTSSSFPSGASSPFLPHPNNmangvdgNPILPWLKTLSTSPASK 94 
                        78999*******************........9********************999999988999999999*******99988776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056872.4E-111788IPR008540BES1/BZR1 plant transcription factor, N-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MGFVVGRGMD ELGGVCGYKP PERMEVIGCS VSPSPCSSYQ PSPRASYNAS PTSSSFPSGA  60
SSPFLPHPNN MANGVDGNPI LPWLKTLSTS PASKKHPQLP PLLIHGGSIS APVTPPLSSP  120
TARTPRMKTD WDESNVQPTW TGSNSPCVVN STPPSPGRTM LPDPAWLAGI QISSTSPSSP  180
TFSLVSSNPF SVFKDAIPVG NNSSRMCTPG QSGTCSPAIP GMAPHPDIHM MDAVSDEFAF  240
GSSTNGGHQA AGLVRAWEGE RIHEDSGSDD LELTLGSSRT RAAA
Functional Description ? help Back to Top
Source Description
UniProtMay function in brassinosteroid signaling. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00248DAPTransfer from AT1G78700Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538747.1_FGP036
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622415.10.0protein BZR1 homolog 2
SwissprotQ0JPT40.0BZR2_ORYSJ; Protein BZR1 homolog 2
TrEMBLB8A6K90.0B8A6K9_ORYSI; Uncharacterized protein
STRINGORUFI01G07130.20.0(Oryza rufipogon)
STRINGOBART01G06590.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP136638112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78700.19e-53BES1/BZR1 homolog 4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]