PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538747.1_FGP010
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 200aa    MW: 21553.8 Da    PI: 9.6027
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538747.1_FGP010genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.81.1e-31148197150
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
             SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 
                        krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+
  KN538747.1_FGP010 148 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 197
                        79***********************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-42140199IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.992140200IPR002100Transcription factor, MADS-box
CDDcd002651.03E-39141199No hitNo description
SuperFamilySSF554553.14E-29141199IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-33142162IPR002100Transcription factor, MADS-box
PROSITE patternPS003500142196IPR002100Transcription factor, MADS-box
PfamPF003196.5E-27149196IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-33162177IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-33177198IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MAVGEVLTER RREHALLLLF AKINFQSTLQ PSVILSTFGW ISIPVKASTT SVTAGGKRAS  60
AQNTETLTTD LVLIPICRQE PKISSIVPEK ESLFSDLINS CKLPTDLSCG PSSMTELTAA  120
AAPAGSGSSA AVAAGSSEKM GRGKIEIKRI ENTTNRQVTF CKRRNGLLKK AYELSVLCDA  180
EVALIVFSSR GRLYEYANNR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P4e-21140197158Myocyte-specific enhancer factor 2B
1tqe_Q4e-21140197158Myocyte-specific enhancer factor 2B
1tqe_R4e-21140197158Myocyte-specific enhancer factor 2B
1tqe_S4e-21140197158Myocyte-specific enhancer factor 2B
6c9l_A4e-21140197158Myocyte-specific enhancer factor 2B
6c9l_B4e-21140197158Myocyte-specific enhancer factor 2B
6c9l_C4e-21140197158Myocyte-specific enhancer factor 2B
6c9l_D4e-21140197158Myocyte-specific enhancer factor 2B
6c9l_E4e-21140197158Myocyte-specific enhancer factor 2B
6c9l_F4e-21140197158Myocyte-specific enhancer factor 2B
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538747.1_FGP010
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0031051e-158AP003105.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0489A05.
GenBankAP0031971e-158AP003197.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1015E06.
GenBankAP0149571e-158AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126091e-158CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58780.23e-38MIKC_MADS family protein