PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538747.1_FGP002
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 613aa    MW: 65994.7 Da    PI: 5.9254
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538747.1_FGP002genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.36e-09551345
                       --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHH CS
           Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVk 45
                       k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+k
  KN538747.1_FGP002  5 KYVRYTPEQVEALERLYYECPKPSSLRRQQLVRECpalaNVDPKQIK 51
                       6789*******************************999999999997 PP
2START135.46.3e-43692582204
                        HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTTEEEEE CS
              START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissggalql 93 
                        +aee+++e+++ka+ ++  W +++ +++g++++ +++ s+++ g a+ra+g+v m++a  v+e+l+d++ W ++++++++l           
  KN538747.1_FGP002  69 IAEETLTEFLSKATGTAVEWLQMPGMKPGPDSIGIIAISHGCAGVAARACGLVGMEPA-KVAEILKDRPLWLRDCRSMDVL----------- 148
                        789*******************************************************.8888888888*******99996........... PP

                        EEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHH CS
              START  94 mvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwll 181
                             +a+++l+p Rdf+ +Ry+  l +g++v++++S++s+q  p+    ++++R+e+lpSg+li+p+++g+s +++v+h+dl+ +++++++
  KN538747.1_FGP002 149 -----YAPTTLAPaRDFWLLRYTSILDDGSLVVCERSLSSKQGGPSmplVQPFIRGEMLPSGFLIRPSDDGGSVIHIVDHMDLEPWSVPEVV 235
                        .....789999999*******************************999999***************************************** PP

                        HHHHHHHHHHHHHHHHHHTXXXX CS
              START 182 rslvksglaegaktwvatlqrqc 204
                        r+l++s+++ ++k+ +a+l++++
  KN538747.1_FGP002 236 RPLYESSAMVAQKISMAALRYLR 258
                        *******************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF000461.4E-6551IPR001356Homeobox domain
CDDcd000869.62E-7551No hitNo description
SuperFamilySSF466891.8E-6650IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.8E-7851IPR009057Homeodomain-like
PROSITE profilePS5084818.13566260IPR002913START domain
Gene3DG3DSA:3.30.530.201.3E-1566235IPR023393START-like domain
SuperFamilySSF559613.43E-3168260No hitNo description
SMARTSM002341.9E-3268260IPR002913START domain
PfamPF018521.3E-4069258IPR002913START domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 613 aa     Download sequence    Send to blast
MDASKYVRYT PEQVEALERL YYECPKPSSL RRQQLVRECP ALANVDPKQI KLSRLLAGGG  60
VRCCRLMSIA EETLTEFLSK ATGTAVEWLQ MPGMKPGPDS IGIIAISHGC AGVAARACGL  120
VGMEPAKVAE ILKDRPLWLR DCRSMDVLYA PTTLAPARDF WLLRYTSILD DGSLVVCERS  180
LSSKQGGPSM PLVQPFIRGE MLPSGFLIRP SDDGGSVIHI VDHMDLEPWS VPEVVRPLYE  240
SSAMVAQKIS MAALRYLRQV AHEDTRSVIT GWGRQPAALR ALSQKLTRGF NEALNGLADD  300
GWSVIESDGV DDVCISVNSS KVIGCNATFS SGLPIVSTGV LCAKTSMLLQ DVSPPTLLQF  360
LREHRSQWAD SNLDAFFASA MKPNFCNLPM SRLGGFSGQV ILPLAHTFEP EEFLEVIKLG  420
NANNYQDTLV HRDLFLLQMY NGVEECSAGT CSELIFAPID ASFSDDSPLL PSGFRIIPID  480
SPRDTSSPNC TLDLASTLEA ATPRSRISGV NGGGGGGCAA AAASSSSKAV MTIAFQFAFD  540
GHLQDSVAAM ARQYMRSIIS SVQRIAVALS SSRLVPPGAG AAAAQLSPVT PEAATLPRWI  600
CQSYRSVASQ LLV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538747.1_FGP002
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB3742070.0AB374207.1 Oryza sativa Japonica Group OSHB5 mRNA for class III homeodomain-leucine zipper protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624690.10.0homeobox-leucine zipper protein HOX29
SwissprotA2WLR50.0HOX29_ORYSI; Homeobox-leucine zipper protein HOX29
TrEMBLA0A0D3EKR80.0A0A0D3EKR8_9ORYZ; Uncharacterized protein
STRINGOMERI01G06600.30.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.30.0HD-ZIP family protein