PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538746.1_FGP011
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 607aa    MW: 66035.3 Da    PI: 6.5119
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538746.1_FGP011genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.12.3e-214196156
                       TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                       +++ +++t++q++eLe+lF+++++p++++r+eL+++l+L+ rqVk+WFqNrR+++k
  KN538746.1_FGP011 41 KKRYHRHTPQQIQELEALFKECPHPDEKQRAELSRRLSLDARQVKFWFQNRRTQMK 96
                       678899***********************************************999 PP
2START133.42.5e-4223034993206
                        EEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE..-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXH CS
              START  93 lmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvd..seqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlph 178
                        +m+aelq+lsplvp R+++f+R+++ql +g w++vdvS+d  ++++++    + + v++++lpSg+++++++ng++kvtwveh++++++++h
  KN538746.1_FGP011 230 TMKAELQVLSPLVPiREVTFLRFCKQLAEGAWAVVDVSIDglVRDHNSGtaaTGGNVKCRRLPSGCVMQDTPNGYCKVTWVEHTEYDEASVH 321
                        699************************************96556777667788899************************************ PP

                        HHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
              START 179 wllrslvksglaegaktwvatlqrqcek 206
                        +l+r+l++sgla+ga++w+atlqrqce+
  KN538746.1_FGP011 322 QLYRPLLQSGLAFGARRWLATLQRQCEC 349
                        **************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.2E-222592IPR009057Homeodomain-like
SuperFamilySSF466894.6E-213198IPR009057Homeodomain-like
PROSITE profilePS5007118.1233898IPR001356Homeobox domain
SMARTSM003891.5E-1939102IPR001356Homeobox domain
CDDcd000861.30E-184098No hitNo description
PfamPF000466.6E-194196IPR001356Homeobox domain
PROSITE patternPS0002707396IPR017970Homeobox, conserved site
SMARTSM002341.6E-1592349IPR002913START domain
PfamPF018524.9E-37230349IPR002913START domain
SuperFamilySSF559617.0E-21234349No hitNo description
PROSITE profilePS5084827.274237352IPR002913START domain
SuperFamilySSF559611.75E-21370573No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 607 aa     Download sequence    Send to blast
MTRDTEAEND SRSGSDHLDA ISAAGEDDVE DAEPSNSRKR KKRYHRHTPQ QIQELEALFK  60
ECPHPDEKQR AELSRRLSLD ARQVKFWFQN RRTQMKTQLE RHENALLKQE NDKLRAENMT  120
IREAMRSPMC GSCGSPAMLG EVSLEEQHLR IENARLKDEL NRVCALATKF LGKPISLLSP  180
PPLLQPHLSL PMPNSSLELA IGGIGGLGSL GTLPGCMNEF AGGVSSPMGT MKAELQVLSP  240
LVPIREVTFL RFCKQLAEGA WAVVDVSIDG LVRDHNSGTA ATGGNVKCRR LPSGCVMQDT  300
PNGYCKVTWV EHTEYDEASV HQLYRPLLQS GLAFGARRWL ATLQRQCECL AILMSSTTVT  360
ANDSTAISQE GKRSMLKLAR RMTENFCAGV SASSAREWSK LDGATGSIGE DVRVMARKSV  420
SEPGEPPGVV LSAATSVWVP VAPEKLFNFL RDEQLRAEWD ILSNGGPMQE MTQIAKGQRD  480
GNSVSLLRAS AVSANQSSML ILQETCTDAS GSIVVYAPVD IPAMQLVMNG GDSTYVALLP  540
SGFAILPDGP RIGATGYETG GSLLTVAFQI LVNNQPTAKL TVESVETVNN LISCTIKKIK  600
TALQCDA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13741RKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538746.1_FGP011
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1016480.0AB101648.1 Oryza sativa Japonica Group Roc5 mRNA for GL2-type homeodomain protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015625616.10.0homeobox-leucine zipper protein ROC5
SwissprotQ6EPF00.0ROC5_ORYSJ; Homeobox-leucine zipper protein ROC5
TrEMBLA0A3L6SNG90.0A0A3L6SNG9_PANMI; Homeobox-leucine zipper protein ROC5-like isoform X2
STRINGOMERI02G26100.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120337116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61150.11e-180homeodomain GLABROUS 1
Publications ? help Back to Top
  1. Zou LP, et al.
    Leaf rolling controlled by the homeodomain leucine zipper class IV gene Roc5 in rice.
    Plant Physiol., 2011. 156(3): p. 1589-602
    [PMID:21596949]
  2. Chou IT,Gasser CS
    Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins.
    Plant Mol. Biol., 1997. 35(6): p. 873-92
    [PMID:9426607]