PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538745.1_FGP017
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HSF
Protein Properties Length: 513aa    MW: 56752.8 Da    PI: 4.897
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538745.1_FGP017genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind83.43.2e-2611369102
                        HHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTT....EEE---SSBTTTT...................... CS
       HSF_DNA-bind   9 iledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYg....Fkkvkdeekksks...................... 74 
                        +++d++++ ++sw   +nsfvv+++ efa+++LpkyFkhsnf+SFvRQLn+Y     F++ + ++ + +s                      
  KN538745.1_FGP017   1 MVDDPATDAVVSWGPGNNSFVVWNTPEFARDLLPKYFKHSNFSSFVRQLNTYPtlplFNSFSLKNFEVSSkysflseltnncatttpsksps 92 
                        899************99***********************************75556888888888766699*****************999 PP

                        ................XTTSEEEEESXXXXXXXXXXXXXXXXXX CS
       HSF_DNA-bind  75 ................kekiweFkhksFkkgkkellekikrkks 102
                                        +++ weF+++ F +g+k+ll++i+r+k 
  KN538745.1_FGP017  93 vippvkdclfqgfrkvDPDRWEFANEGFLRGQKHLLKTINRRKP 136
                        999999888877765449************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.99E-24160IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004474.7E-231134IPR000232Heat shock factor (HSF)-type, DNA-binding
SMARTSM004151.0E-351134IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.4E-291134IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000565.9E-53244IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.9E-54557IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.99E-24102134IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MVDDPATDAV VSWGPGNNSF VVWNTPEFAR DLLPKYFKHS NFSSFVRQLN TYPTLPLFNS  60
FSLKNFEVSS KYSFLSELTN NCATTTPSKS PSVIPPVKDC LFQGFRKVDP DRWEFANEGF  120
LRGQKHLLKT INRRKPTHGN NQVQQPQLPA APVPACVEVG KFGMEEEIEM LKRDKNVLMQ  180
ELVRLRQQQQ TTDHQLQTLG KRLQGMEQRQ QQMMSFLAKA MHSPGFLAQF VQQNENSRRR  240
IVASNKKRRL PKQDGSLDSE SASLDGQIVK YQPMINEAAK AMLRKILKLD SSHRFESMGN  300
SDNFLLENYM PNGQGFDSSS STRNSGVTLA EVPANSGLPY VATSSGLSAI CSTSTPQIQC  360
PVVLDNGIPK EVPNMSAVPS VPKAVAPGPT DINIPEFPDL QDIVAEENVD IPGGGFEMPG  420
PEGVFSLPEE GDDSVPIETD EILYNDDTQK LPGIIDSFWE QFLVASPLSV DNDEVDSGVL  480
DQKETQQGNG WTKAENMANL TGQMGLLSSH HTG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-14113427120Heat shock factor protein 1
5d5u_B2e-141523687Heat shock factor protein 1
5d5v_B2e-141523687Heat shock factor protein 1
5d5v_D2e-141523687Heat shock factor protein 1
5hdg_A1e-141521768Heat shock factor protein 1
5hdn_A1e-141521768Heat shock factor protein 1
5hdn_B1e-141521768Heat shock factor protein 1
5hdn_C1e-141521768Heat shock factor protein 1
5hdn_D1e-141521768Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00514DAPTransfer from AT5G16820Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538745.1_FGP017
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1205060.0AC120506.5 Oryza sativa Japonica Group cultivar Nipponbare chromosome 3 clone OSJNBb0006O08 map S15179S, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630421.10.0heat stress transcription factor A-1
SwissprotQ84T610.0HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBLA0A0E0D9P90.0A0A0E0D9P9_9ORYZ; Uncharacterized protein
STRINGONIVA03G43540.10.0(Oryza nivara)
STRINGORGLA03G0383200.10.0(Oryza glaberrima)
STRINGOBART03G41440.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50973151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.21e-107heat shock factor 3
Publications ? help Back to Top
  1. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]