PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538745.1_FGP012
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 412aa    MW: 44557.8 Da    PI: 7.4706
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538745.1_FGP012genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY30.95.6e-10196216222
                        --SS-EEEEEEE--TT-SS-E CS
               WRKY   2 dDgynWrKYGqKevkgsefpr 22 
                        +D ++WrKYGqK++kgs++pr
  KN538745.1_FGP012 196 SDLWAWRKYGQKPIKGSPYPR 216
                        699*****************9 PP
2WRKY506.1e-162412802159
                        -EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY  21 prsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          +YYrC+s+ gC+++k+vers++dp++++itY+ eHnh+
  KN538745.1_FGP012 241 NWGYYRCSSSkGCMARKQVERSRSDPNMLVITYTAEHNHP 280
                        568*****998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081126.314190282IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.4E-26193282IPR003657WRKY domain
SuperFamilySSF1182903.14E-7194217IPR003657WRKY domain
SMARTSM007743.1E-32195281IPR003657WRKY domain
PfamPF031061.9E-15197280IPR003657WRKY domain
SuperFamilySSF1182903.27E-13239282IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MDMMEEEAAN AATAQAAAAG DLADVVARAN ARAFLLSTPH HHHSPLHPLP PPPPLPMPQP  60
HAPQITIPYH HHHGELRRPT TIAYTDAPVP FETAGPPSTV VDSYHHLTPG NGGYGMPRPL  120
ALQISQHALC GGGDVVMGGA GAGAADDGED AIRISPLTPS AHHQMMKRKN EVKKVVCIPA  180
PPATSSRGGG GEVIPSDLWA WRKYGQKPIK GSPYPRYCIS GQKHQNHGHN SFHISCLDNF  240
NWGYYRCSSS KGCMARKQVE RSRSDPNMLV ITYTAEHNHP WPMQRNVLAG YARSHHSTHA  300
TASSSRHKQQ QQQTNQLQPA LITSSSSSSS SSPFNLYGDV VLGGQQANMM MTTTEGAGAG  360
LGIQQPSAAD EVFAELEELE PDNPTMINAN MQVYSTTSRP GVSSYDHQWH KF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-18169282279Disease resistance protein RRS1
5w3x_D1e-18169282279Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538745.1_FGP012
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1097950.0AK109795.1 Oryza sativa Japonica Group cDNA clone:002-147-E06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630180.10.0uncharacterized protein LOC4334831
TrEMBLA0A0D9ZG060.0A0A0D9ZG06_9ORYZ; Uncharacterized protein
STRINGOGLUM03G41320.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134662832
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.12e-49WRKY DNA-binding protein 35