PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538744.1_FGP029
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 304aa    MW: 33970.5 Da    PI: 6.999
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538744.1_FGP029genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.51.9e-51101411128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                        +ppGfrFhPtdeel+ +yL+kkv+ + ++l +vi+e+d++k+ePwdL+   ++ +  ++ewyfFs+++kky+tg+r+nrat++g+Wkatg+d
  KN538744.1_FGP029  10 VPPGFRFHPTDEELLYYYLRKKVAYEAIDL-DVIREIDLNKLEPWDLKDrcRIGTgPQEEWYFFSHNHKKYPTGTRTNRATAAGFWKATGRD 100
                        69****************************.9***************943444442456********************************* PP

                NAM  90 kevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        k+++    +g+ +gl+ktLvfy+grap+g+ktdW+mheyrl
  KN538744.1_FGP029 101 KAIFLGggGGTRIGLRKTLVFYTGRAPHGKKTDWIMHEYRL 141
                        *****8777888***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-578161IPR003441NAC domain
PROSITE profilePS5100557.62210161IPR003441NAC domain
PfamPF023652.3E-2711141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003002Biological Processregionalization
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0010455Biological Processpositive regulation of cell fate commitment
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MHPNGAPLTV PPGFRFHPTD EELLYYYLRK KVAYEAIDLD VIREIDLNKL EPWDLKDRCR  60
IGTGPQEEWY FFSHNHKKYP TGTRTNRATA AGFWKATGRD KAIFLGGGGG TRIGLRKTLV  120
FYTGRAPHGK KTDWIMHEYR LDDDNVDVPE EGWVVCRVFK KKSIHQRGFD QPDMAAAADE  180
DELRYQLLHG AGMSSSPVDQ KHVLLQEQLV AHGAHGGGFV VPAFDASMHL PQLASPDAAP  240
CAGVAFASMN PLDANLDQLF HGKVAGAHQQ HQQQMAMDAA SSLQRLPFHH YLGLEAADLL  300
KFSM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A9e-50816718174NAC domain-containing protein 19
3swm_B9e-50816718174NAC domain-containing protein 19
3swm_C9e-50816718174NAC domain-containing protein 19
3swm_D9e-50816718174NAC domain-containing protein 19
3swp_A9e-50816718174NAC domain-containing protein 19
3swp_B9e-50816718174NAC domain-containing protein 19
3swp_C9e-50816718174NAC domain-containing protein 19
3swp_D9e-50816718174NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00250DAPTransfer from AT1G79580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538744.1_FGP029
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0639430.0AK063943.1 Oryza sativa Japonica Group cDNA clone:001-123-E07, full insert sequence.
GenBankAK1012800.0AK101280.1 Oryza sativa Japonica Group cDNA clone:J033033C18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624882.10.0NAC domain-containing protein 76-like
RefseqXP_025878787.10.0NAC domain-containing protein 76-like
SwissprotQ5Z6B61e-110NAC76_ORYSJ; NAC domain-containing protein 76
TrEMBLA0A0E0G4E90.0A0A0E0G4E9_ORYNI; Uncharacterized protein
STRINGONIVA02G12010.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34613781
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79580.33e-83NAC family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]