PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KN538743.1_FGP013 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 127aa MW: 14028.9 Da PI: 9.4062 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 34.7 | 3.7e-11 | 22 | 83 | 2 | 63 |
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 +e + rk +NR++A+rsR +K+++++ L+ ++++L eN+a++ + + + +++e+ KN538743.1_FGP013 22 EEERQRNRKRSNRLSAQRSRMKKQQYVDGLAVEAEQLRRENDAMRAAAGAVLQRCRLVEQEN 83 3444455888***********************************99988888777666665 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 6.9E-10 | 18 | 76 | No hit | No description |
SMART | SM00338 | 1.2E-12 | 20 | 85 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 3.3E-8 | 22 | 76 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.772 | 23 | 86 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 7.5E-9 | 25 | 76 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 29 | 43 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14702 | 4.71E-12 | 32 | 77 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 127 aa Download sequence Send to blast |
MSVAPATEGS ARRSAAAAAE EEEERQRNRK RSNRLSAQRS RMKKQQYVDG LAVEAEQLRR 60 ENDAMRAAAG AVLQRCRLVE QENRVLAAHA RELCSALQLR ASQLRLLGEV AGVPLDVPDV 120 SVVYCLT |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KN538743.1_FGP013 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC134769 | 0.0 | AC134769.1 Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1145F05, from chromosome 3, complete sequence. | |||
GenBank | AK109929 | 0.0 | AK109929.1 Oryza sativa Japonica Group cDNA clone:002-151-H09, full insert sequence. | |||
GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012611 | 0.0 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015631799.1 | 7e-64 | ocs element-binding factor 1 | ||||
TrEMBL | A0A0E0GLC2 | 4e-75 | A0A0E0GLC2_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA03G15500.1 | 6e-76 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12504 | 28 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G34590.1 | 1e-08 | G-box binding factor 6 |