PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538742.1_FGP016
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 412aa    MW: 45302.7 Da    PI: 6.5792
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538742.1_FGP016genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.63.5e-30150206259
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        dDgynWrKYGqK vkg e+p+sYY+Ct+ +C v+k+ve+sa d+++v+i+Y+g+H+he
  KN538742.1_FGP016 150 DDGYNWRKYGQKAVKGGEYPKSYYKCTHLNCLVRKNVEHSA-DGRIVQIIYRGQHTHE 206
                        8****************************************.***************8 PP

2WRKY103.31.3e-32318376159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        ldDgy+WrKYGqK+vkg+++prsYY+Ct+ gC vkk+vers e+p++v++tYeg+H h+
  KN538742.1_FGP016 318 LDDGYRWRKYGQKVVKGNPYPRSYYKCTYLGCDVKKQVERSVEEPNAVITTYEGKHIHD 376
                        59*******************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.1E-27144208IPR003657WRKY domain
SuperFamilySSF1182901.31E-24147208IPR003657WRKY domain
SMARTSM007747.5E-33149207IPR003657WRKY domain
PROSITE profilePS5081123.376150208IPR003657WRKY domain
PfamPF031061.1E-22150206IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.9E-34305378IPR003657WRKY domain
SuperFamilySSF1182903.27E-29311378IPR003657WRKY domain
PROSITE profilePS5081134.762313378IPR003657WRKY domain
SMARTSM007742.3E-38318377IPR003657WRKY domain
PfamPF031063.9E-25319375IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MAAPPPPLSG TAVLIGYPQV WTSAAIAFLS LLSGRLWNAV EELTSHYISL IMVRLVQGNF  60
ETFPQQDLVP LTAQEVHSKC ITFGRAENPS FIPLATSALV SQHTGSSTVN VTPLQEILTL  120
PSQISNVNTE SIGVLQGLPA SSIVLDRPAD DGYNWRKYGQ KAVKGGEYPK SYYKCTHLNC  180
LVRKNVEHSA DGRIVQIIYR GQHTHERPSK RRFKDCGGIS DDLDDFSGTT GTSVRSQPDY  240
DDYCRKPIIP SGTMVAPLVK KIEDGDDQLS GSSDNQDEHD DEVRTADGAS GDASANERNV  300
PAPGQKIIVS TTSEIDLLDD GYRWRKYGQK VVKGNPYPRS YYKCTYLGCD VKKQVERSVE  360
EPNAVITTYE GKHIHDVPAA RNKSHVVANA SLLQNTKSNT YCTEQSYTTI TC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-34150379878Probable WRKY transcription factor 4
2lex_A1e-34150379878Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538742.1_FGP016
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3418470.0AY341847.1 Oryza sativa (japonica cultivar-group) WRKY6 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646950.20.0probable WRKY transcription factor 3
TrEMBLA0A0E0AM800.0A0A0E0AM80_9ORYZ; Uncharacterized protein
STRINGOGLUM07G20830.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134538122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.15e-77WRKY DNA-binding protein 3