PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538739.1_FGP005
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HSF
Protein Properties Length: 431aa    MW: 48283.1 Da    PI: 5.1709
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538739.1_FGP005genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind103.41.9e-32471382103
                        HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
       HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                        Fl+k+y++++d++++++isw e g sfv++d++ f++  L+++Fkhsnf+SF+RQLn+YgF+kv+ ++         we++++ F  g+k+l
  KN538739.1_FGP005  47 FLTKVYDMVSDPATDNVISWAEGGGSFVIWDSHAFER-DLHRHFKHSNFTSFIRQLNTYGFRKVHPDR---------WEWANEGFIMGQKHL 128
                        9************************************.8**************************999.........*************** PP

                        XXXXXXXXXX CS
       HSF_DNA-bind  94 lekikrkkse 103
                        l++ikr+k++
  KN538739.1_FGP005 129 LKTIKRRKKS 138
                        *******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.1E-3339130IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004159.3E-5043135IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.09E-3043135IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000564.1E-164770IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.5E-2847135IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.1E-168496IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434085109IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.1E-1697109IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MGSKKRSPQH PSAAAPPPAV GGEVSGDGGA STANGPVVPK PSEVAPFLTK VYDMVSDPAT  60
DNVISWAEGG GSFVIWDSHA FERDLHRHFK HSNFTSFIRQ LNTYGFRKVH PDRWEWANEG  120
FIMGQKHLLK TIKRRKKSSQ EAPSEIQKAP VKTAPGTENI EIGKYGGLEK EVETLKRDKA  180
LLMQQLVDLR HYQQTSNLEV QNLIERLQVM EQNQQQMMAL LAIVVQNPSF LNQLVQQQQQ  240
QRRSNWWSPD GSKKRRFHAL EQGPVTDQET SGRGAHIVEY LPPVPETSGQ VNPVEGAICS  300
ANSQPVPSPA VATPMDMQTS NVADTLGSSE EPFTDNSTLH EWDDNDMQLL FDDNLDPILP  360
PFENDGQMGP PLSVQDYDFP QLEQDCLMEA QYNSNNPQYE NKRDVILVNC GVSMCMFHAK  420
CQTMDVYRPP F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B7e-222813510129Heat shock factor protein 1
5d5v_B7e-222813510129Heat shock factor protein 1
5d5v_D7e-222813510129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128134LKTIKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538739.1_FGP005
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3444900.0AY344490.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF8 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633341.10.0heat stress transcription factor A-9
SwissprotQ10PR40.0HSFA9_ORYSJ; Heat stress transcription factor A-9
TrEMBLA0A0E0KAR30.0A0A0E0KAR3_ORYPU; Uncharacterized protein
STRINGOPUNC03G08660.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114943039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.11e-72heat shock transcription factor A1D
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]