PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN538738.1_FGP004 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WRKY | ||||||||
Protein Properties | Length: 154aa MW: 16978.2 Da PI: 8.4252 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 34.7 | 3.5e-11 | 100 | 122 | 1 | 23 |
---SS-EEEEEEE--TT-SS-EE CS WRKY 1 ldDgynWrKYGqKevkgsefprs 23 ldDg++WrKYG+K vk+s++pr+ KN538738.1_FGP004 100 LDDGFKWRKYGKKAVKNSPNPRK 122 59********************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.1E-11 | 88 | 128 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.79E-9 | 92 | 123 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 13.448 | 95 | 131 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.3E-4 | 100 | 137 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.7E-7 | 101 | 128 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 154 aa Download sequence Send to blast |
MAASVGLNPE AFLISNSYSY SSSPFMASYT PELSAAAIDA DLFSGELDFD CSLPAPAFAG 60 AGEEYPENEN TMLRYESEEK MRGRVNGRIG FRTRSEVEIL DDGFKWRKYG KKAVKNSPNP 120 RKRLRMAMGH GRVVGRTAME FSMLVFARAI AGQG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 119 | 125 | PRKRLRM |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN538738.1_FGP004 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK066252 | 1e-130 | AK066252.1 Oryza sativa Japonica Group cDNA clone:J013052M10, full insert sequence. | |||
GenBank | CT832802 | 1e-130 | CT832802.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN033C24, full insert sequence. | |||
GenBank | CU406216 | 1e-130 | CU406216.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C108D08, full insert sequence. | |||
GenBank | CU406218 | 1e-130 | CU406218.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C108D09, full insert sequence. | |||
GenBank | DQ840415 | 1e-130 | DQ840415.1 Hordeum vulgare subsp. vulgare WRKY transcription factor 16 (WRKY16) mRNA, partial cds. | |||
GenBank | HQ858875 | 1e-130 | HQ858875.1 Oryza sativa Japonica Group isolate UT1752 WRKY transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638018.1 | 5e-62 | probable WRKY transcription factor 50 | ||||
TrEMBL | A0A0E0DMW6 | 9e-68 | A0A0E0DMW6_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI05G05120.1 | 1e-68 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP441 | 37 | 206 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26170.1 | 6e-18 | WRKY DNA-binding protein 50 |