PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538737.1_FGP040
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 98aa    MW: 11089.8 Da    PI: 11.5006
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538737.1_FGP040genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like104.85e-332174255
            G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                       prlrWtp+LH++Fv+a+++LGG++kAtPk++l+lm+v gLt++hvkSHLQ+YR 
  KN538737.1_FGP040 21 PRLRWTPDLHHCFVHAIHKLGGQDKATPKRVLQLMGVGGLTISHVKSHLQMYRN 74
                       8****************************************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.6531777IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.8E-321777IPR009057Homeodomain-like
SuperFamilySSF466893.58E-171976IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-252174IPR006447Myb domain, plants
PfamPF002495.5E-112273IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 98 aa     Download sequence    Send to blast
MVGGGRERNG GVRQYNRSKV PRLRWTPDLH HCFVHAIHKL GGQDKATPKR VLQLMGVGGL  60
TISHVKSHLQ MYRNMRNDLG MQATTPQSLE RSHCFTSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A1e-202276357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-202276357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-202276357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-202276357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00301DAPTransfer from AT2G40260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538737.1_FGP040
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0689101e-73BT068910.1 Zea mays full-length cDNA clone ZM_BFc0191L18 mRNA, complete cds.
GenBankHQ8587021e-73HQ858702.1 Zea mays clone UT1158 G2-like transcription factor mRNA, partial cds.
GenBankKJ7268131e-73KJ726813.1 Zea mays clone pUT3230 G2-like transcription factor (GLK48) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880094.13e-55uncharacterized protein LOC4331498 isoform X1
SwissprotQ700D92e-27MYBF_ARATH; Putative Myb family transcription factor At1g14600
TrEMBLJ3LJK62e-57J3LJK6_ORYBR; Uncharacterized protein
STRINGOB03G12320.13e-58(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76102950
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40260.12e-29G2-like family protein